2014

P Bronsert, K Enderle-Ammour, M Bader, S Timme, M Kuehs, A Csanadi, G Kayser, I Kohler, D Bausch, J Hoeppner, UT Hopt, T Keck, E Stickeler, B Passlick, O Schilling, CP Reiss, Y Vashist, T Brabletz, J Berger, J Lotz, J Olesch, M Werner, and UF Wellner,
Cancer cell invasion and EMT marker expression - a three-dimensional study of the human cancer-host interface -, The Journal of Pathology , 2014. John Wiley & Sons, Ltd.
File: path.4416
Bibtex: BibTeX
@article {PATH:PATH4416,
author = {Bronsert, P and Enderle-Ammour, K and Bader, M and Timme, S and Kuehs, M and Csanadi, A and Kayser, G and Kohler, I and Bausch, D and Hoeppner, J and Hopt, UT and Keck, T and Stickeler, E and Passlick, B and Schilling, O and Reiss, CP and Vashist, Y and Brabletz, T and Berger, J and Lotz, J and Olesch, J and Werner, M and Wellner, UF},
title = {Cancer cell invasion and EMT marker expression - a three-dimensional study of the human cancer-host interface -},
journal = {The Journal of Pathology},
publisher = {John Wiley & Sons, Ltd},
issn = {1096-9896},
url = {http://dx.doi.org/10.1002/path.4416},
pages = {},
keywords = {cancer cell invasion, epithelial-mesenchymal transition, tumor budding, human adenocarcinoma, three dimensional reconstruction},
year = {2014}
}
Robert Haase, Fabian Lohaus, Jan Rühaak, D\"orte Straaten, Klaus Zöphel, and Christian Richter,
Einfluss deformierbarer Bildregistrierung von PET-CT-Verlaufsdaten auf die Signalwerte innerhalb einer Kontur: Deformation auf Konturen oder Bilddaten anwenden?, in Proceedings of 20. Jahrestagung der Deutschen Gesellschaft für Radioonkologie (DEGRO), Düsseldorf , 2014.
Bibtex: BibTeX
@inproceedings{2014-DEGRO-HLRSZR,
title={Einfluss deformierbarer {B}ildregistrierung von {P}{E}{T}/{C}{T}-{V}erlaufsdaten auf die {S}ignalwerte innerhalb einer {K}ontur: {D}eformation auf {K}onturen oder {B}ilddaten anwenden?},
author={Robert Haase and Fabian Lohaus and Jan R\"uhaak and D\"orte van Straaten and Klaus Z\"ophel and Christian Richter},
booktitle={Proceedings of 20. Jahrestagung der Deutschen Gesellschaft f\"ur Radioonkologie (DEGRO), D\"usseldorf},
year={2014}
}
J Georgii, T Bartscherer, C Degel, H Fonfara, H Hewener, T Kipshagen, B Kocev, J Lotz, D Ojdanic, J Olesch, S Rothlübbers, D Speicher, S Tretbar, H Hahn, and M Günther,
Improving Breast Biopsies by Motion Tracking. Proc. of Image-Guided Interventions, in Proc. of Image-Guided Interventions (IGIC) , 2014. pp. 79-80.
Bibtex: BibTeX
@inproceedings{georgi2014IGIC,
author = {Georgii, J and Bartscherer, T and Degel, C and Fonfara, H and Hewener, H and Kipshagen, T and Kocev, B and Lotz, J and Ojdanic, D and Olesch, J and Rothlübbers, S and Speicher, D and Tretbar, S and Hahn, H and Günther, M},
title = { Improving Breast Biopsies by Motion Tracking. Proc. of Image-Guided Interventions},
booktitle = {Proc. of Image-Guided Interventions (IGIC)},
pages = {79-80},
year = {2014}
}
Johannes Lotz, Judith Berger, Herbert Thiele, Janine Olesch, Benedikt Müller, Kai Breuhahn, Arne Warth, Niels Grabe, Bernd Lahrmann, Oliver Sedlaczek, and Stefan Heldmann,
Elastic image registration on whole slide images for digital double staining and 3D reconstruction, in Poster Submission at the European Molecular Imaging Meeting - EMIM , 2014.
File: wwu
Bibtex: BibTeX
@inproceedings{lotz2014elastic,
  title={Elastic image registration on whole slide images for digital double staining and 3D reconstruction},
  author={Johannes Lotz and Judith Berger and Herbert Thiele and Janine Olesch and Benedikt Müller and Kai Breuhahn and Arne Warth  and Niels Grabe and Bernd Lahrmann and Oliver Sedlaczek and Stefan Heldmann
},
  booktitle={Poster Submission at the European Molecular Imaging Meeting - EMIM},
  year={2014},
  url = {http://s.fhg.de/wwu},
  organization={European Society for Molecular Imaging}
}
Janine Olesch,
Bildregistrierung für die navigierte Chirurgie., .... Springer Vieweg, 2014.
ISBN:9783658056544
Bibtex: BibTeX
@BOOK{Olesch201311,
title={Bildregistrierung für die navigierte Chirurgie},
series = {Aktuelle Forschung Medizintechnik},
author={Janine Olesch},
publisher={Springer Vieweg},
year={2014},
isbn={9783658056544},
price={EUR 59,99},
totalpages={267}
}
S Sorrentino, M Peperhove, T Kaireit, J Rühaak, J Strehlow, F Wacker, J Vogel-Claussen, and H Shin,
Entwicklung eines virtuellen 2D-Herz-Phantoms für die Berechnung regionaler myokardialer Wandbewegung mittels nicht-rigider Bildregistrierung, 2014. pp. RK_VO207_4.
DOI:10.1055/s-0034-1372881
ISBN:1438-9029
Bibtex: BibTeX
@INPROCEEDINGS{sorrentino2014Entwicklung,
  author = {Sorrentino,S and Peperhove,M and Kaireit,T and R{\"u}haak,J and Strehlow,J
	and Wacker,F and Vogel-Claussen,J and Shin,H},
  title = {{E}ntwicklung eines virtuellen 2{D}-{H}erz-{P}hantoms f{\"u}r die
	{B}erechnung regionaler myokardialer {W}andbewegung mittels nicht-rigider
	{B}ildregistrierung},
  year = {2014},
  volume = {186},
  number = {S 01},
  pages = {RK{\_}VO207{\_}4},
  bdsk-url-1 = {http://dx.doi.org/10.1055/s-0034-1372881},
  da = {22.04.2014},
  date = {2014///},
  date-added = {2014-07-10 15:19:06 +0000},
  date-modified = {2014-07-10 15:19:06 +0000},
  doi = {10.1055/s-0034-1372881},
  isbn = {1438-9029},
  journal = {{F}ortschritte auf dem Gebiet der {R}{\"o}ntgenstrahlen und der bildgebenden Verfahren},
  la = {DE},
  m2 = {RK{\_}VO207{\_}4},
  ty = {JOUR}
}
Björn Beuthien,
Restringierte Medizinische Bildregistrierung, Institute of Mathematics and Image Computing, University of Lübeck, 2014.
Bibtex: BibTeX
@phdthesis{2014-PhD-Beuthien,
  Author = {Bj\"orn Beuthien},
  Title = {Restringierte Medizinische Bildregistrierung},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2014},
}
Johannes Lotz, Judith Berger, Benedikt Müller, Kai Breuhahn, Niels Grabe, Stefan Heldmann, André Homeyer, Bernd Lahrmann, Hendrik Laue, Janine Olesch, Michael Schwier, Oliver Sedlaczek, and Arne Warth,
Zooming in: High Resolution 3D Reconstruction of Differently Stained Histological Whole Slide Images, in SPIE Medical Imaging , 2014. pp. 904104-1--7.
File: Lotz_Berger_-_Zooming_in__High_Resolution_3D_Reconstruction_of_Differently_Stained_Histological_Whole_Slide_Images_SPIE-submitted.pdf
Bibtex: BibTeX
@inproceedings{lotz2014zooming,
  title={Zooming in: High Resolution 3D Reconstruction of Differently Stained Histological Whole Slide Images},
  author={Johannes Lotz and Judith Berger and Benedikt M\"uller and Kai Breuhahn and Niels Grabe and Stefan Heldmann and Andr\'{e} Homeyer and Bernd Lahrmann and Hendrik Laue and Janine Olesch and Michael Schwier and Oliver Sedlaczek and Arne Warth
},
  booktitle={SPIE Medical Imaging},
  year={2014},
  organization={International Society for Optics and Photonics},
pages = {904104-1--7}
} 
Constantin Heck, Lars Ruthotto, Jan Modersitzki, and Benjamin Berkels,
Model-based parameter estimation in DCE-MRI without an Arterial Input Function, in BVM 2014, Bildverarbeitung für die Medizin 2014 , 2014. pp. 246--251.
Bibtex: BibTeX
@Inproceedings{2014-BVM-HRMB,
	Author = {Heck, Constantin and Ruthotto, Lars and Modersitzki, Jan and Berkels, Benjamin},
booktitle = {BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Date-Added = {2014-01-22 13:52:07 +0000},
	Date-Modified = {2014-01-22 13:54:28 +0000},
	Title = {Model-based parameter estimation in DCE-MRI without an Arterial Input Function}
pages = {246--251}}
Anna Katharina Trull, Benjamin Berkels, and Jan Modersitzki,
Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI using a Separable Compartment Model and Parameter Elimination, in BVM 2014, Bildverarbeitung für die Medizin 2014 , 2014. pp. 30--35.
Bibtex: BibTeX
@inproceedings{2014-BVM-TBM,
	Author = {Trull, Anna Katharina and Berkels, Benjamin and Modersitzki, Jan },
Booktitle = {BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Title = {Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI using a Separable Compartment Model and Parameter Elimination}
pages = {30--35}}
Dennis Trede, Andreas Bartels, Stefan Schiffler, Janina Oetjen, Michael Becker, Michaela Aichler, Florian Lieb, Klaus Steinhorst, Judith Berger, Stefan Heldmann, Herbert Thiele, Axel Walch, Peter Maass, and Theodore Alexandrov,
A spatially-aware highly-sensitive peak picking method for MALDI-imaging, 2014.
File: Abstracts-Poster.pdf
Bibtex: BibTeX
@Misc{trede2014DGMS,
  author = 	 {Dennis Trede and Andreas Bartels and Stefan Schiffler and Janina Oetjen and Michael Becker and Michaela Aichler and Florian Lieb and Klaus Steinhorst and Judith Berger and Stefan Heldmann and Herbert Thiele and Axel Walch and Peter Maass and Theodore Alexandrov},
  title = 	 {A spatially-aware highly-sensitive peak picking method for MALDI-imaging},
  note = {Poster Submission at 47. Jahrestagung der Deutschen Gesellschaft für Massenspektrometrie, Frankfurt am Main},
  year = 	 {2014},
  url = 	 {http://www.pharmazie.uni-frankfurt.de/PharmChem/DGMS2014/Programm/Abstracts/Abstracts-Poster.pdf}
}

2013

[English] B Mueller, J Olesch, J Lotz, S Barendt, O Sedlaczek, B Lahrmann, N Grabe, F Bestvater, U Kauczor, {P A} Schnabel, H Hoffmann, B Fischer, P Schirmacher, A Warth, and K Breuhahn,
3D reconstruction of lung adenocarcinomas—one module for the development of mathematical multiscale models of lung cancer, Der Pathologe , vol. 34, no. Suppl 1, pp. 6--163, May 2013.
DOI:10.1007/s00292-013-1765-2
File: s00292-013-1765-2
Bibtex: BibTeX
@article{5c9d7318d40e4b20ad69ccaaba9f5e77,
title = "3D reconstruction of lung adenocarcinomas—one module for the development of mathematical multiscale models of lung cancer",
abstract = "Aims The BMBF-funded LungSysII consortium integrates information derived from molecular biology, cell biology, and histology using systems biology approaches to generate integrative multiscale-models of non-small cell lung cancer (NSCLC). In this context, we aim to define the three dimensional spatial relationship of the vascular system and the tumor mass in human pulmonary adenocarcinomas (ADC) as well as adjacent non-tumorous tissues based on histological data. We here report our most recent progress to generate a comprehensive 3-dimensional (3D) picture of ADC. Methods. Material was collected from freshly resected ADC patients and systematically cut into pieces of up to 1 cm in diameter. Samples were processed for optical projection tomography (OPT) scanning, utilizing tissue autofluorescence or specific epitope staining using directly labelled smooth muscle actin (SMA)-specific antibodies. In addition, alternate staining of serial sections derived from tumor samples were performed including H&E-, factor VIII (FVIII)-, and pan-cytokeratin (KL1) staining. Automated whole slide imaging was performed using the Hamamatsu NanoZoomer Digital Pathology system. The resulting 2D information was used to generate a 3D representation of the data by means of a non-linear elastic image registration. Results. Whole tissue OPT-scanning revealed the spatial distribution of bronchial and vasculature structures in the tumor and adjacent non-tumorous lung tissue. The image quality of the 3D vessel structure was improved solving a non-negatively constrained, L2-based reconstruction problem iteratively (MRNSD) on the raw-data produced by the OPT system. To reconstruct the serial sectioning data to a 3D volume, a special non-linear image registration algorithm was developed and applied. Specialization of the algorithm was needed due to cutting artefacts such as shape distortion and staining variation. The optimized non-linear algorithm was successfully applied on the H&E-, FVIII-, and KL1-staining. Conclusions. We here present approaches for 3D reconstruction of the vascular system and tumor mass in ADC as well as bordering healthy tissue. This quantitative information covers the range μm to cm and can be used for computational tissue modelling and for integration in mathematical multiscale models, which are currently under development.",
author = "B Mueller and J Olesch and J Lotz and S Barendt and O Sedlaczek and B Lahrmann and N Grabe and F Bestvater and U Kauczor and Schnabel, {P A} and H Hoffmann and B Fischer and P Schirmacher and A Warth and K Breuhahn",
year = "2013",
month = may,
day = "1",
doi = "10.1007/s00292-013-1765-2",
language = "English",
volume = "34 ",
pages = "6--163",
journal = "Der Pathologe",
issn = "1432-1963",
number = "Suppl 1",
}
Dagmar Kainm\"uller,
Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data, Institute of Mathematics and Image Computing, University of L\"ubeck, 2013.
Bibtex: BibTeX
@phdthesis{2013-PhD-Kainmueller,
  Author = {Dagmar Kainm\"uller},
  Title = {Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2013},
}
Janine Olesch,
Bildregistrierung für die navigierte Chirurgie, Institute of Medical Informatics, University of L\"ubeck, 2013.
Bibtex: BibTeX
@phdthesis{OleschPhD201311_2,
title={Bildregistrierung f\"ur die navigierte Chirurgie},
author={Janine Olesch},
School = {Institute of Medical Informatics, University of L\"ubeck},
year={2013},
}
Judith Berger, Johannes Lotz, Janine Olesch, Mark Schenk Kai Breuhahn, Benedikt Müller, Arne Warth, Niels Grabe, Bernd Lahrmann, and Oliver Sedlaczek,
Virtual Double Staining Using Elastic Image Registration, 2013.
File: fraunhofer-mevis_pathologyvisions2013.pdf
Bibtex: BibTeX
@Misc{berger2013virtual,
  author = 	 {Judith Berger and Johannes Lotz and Janine Olesch and Mark Schenk
Kai Breuhahn and Benedikt Müller and Arne Warth and Niels Grabe and Bernd Lahrmann and
Oliver Sedlaczek},
  title = 	 {Virtual Double Staining Using Elastic Image Registration},
  note = {Poster Submission at Pathology Visions, San Antonio},
  year = 	 {2013},
  url = 	 {https://digitalpathologyassociation.org/poster-presentations}
}
Thomas Polzin, Jan Rühaak, René Werner, Jan Strehlow, Stefan Heldmann, Heinz Handels, and Jan Modersitzki,
Combining Automatic Landmark Detection and Variational Methods for Lung CT Registration, in Proc. Fifth International MICCAI Workshop on Pulmonary Image Analysis (PIA 2013) , Nagoya, Japan , Sep.2013. pp. 85--96.
Bibtex: BibTeX
@INPROCEEDINGS{2013-PIA-PRWSHHM,
	author = {Polzin, Thomas and R\"{u}haak, Jan and Werner, Ren\'{e} and Strehlow, Jan and Heldmann, Stefan and Handels, Heinz and Modersitzki, Jan},
	booktitle = {Proc. Fifth International MICCAI Workshop on Pulmonary Image Analysis (PIA 2013)},
	title = {Combining Automatic Landmark Detection and
Variational Methods for Lung CT Registration},
	year = {2013},
	address = {Nagoya, Japan},
	month = {September},
       pages = {85--96}
}
Johannes Lotz, Bernd Fischer, Janine Olesch, and Matthias Günther,
Real time motion analysis in 4D medical imaging using conditional density propagation, in SPIE Medical Imaging 2015: Image Processing , 2013. pp. 86690T-86690T-7.
DOI:10.1117/12.2006842
File: lotz2013real.pdf
Bibtex: BibTeX
@inproceedings{lotz2013real,
author = {Lotz, Johannes and Fischer, Bernd and Olesch, Janine and Günther, Matthias},
title = {Real time motion analysis in 4D medical imaging using conditional density propagation},
booktitle ={SPIE Medical Imaging 2015: Image Processing},
volume = {8669},
number = {},
pages = {86690T-86690T-7},
abstract = {Motion, like tumor movement due to respiration, constitutes a major problem in radiotherapy and/or diagnostics.
A common idea to compensate for the motion in 4D imaging, is to invoke a registration strategy, which aligns
the images over time. This approach is especially challenging if real time processing of the data and robustness
with respect to noise and acquisition errors is required.
To this end, we present a novel method which is based only on selected image features and uses a probabilistic
approach to compute the wanted transformations of the 3D images. Moreover, we restrict the search space to
rotation, translation and scaling.
In an initial phase, landmarks in the first image of the series have to be identified, which are in the course
of the scheme automatically transferred to the next image. To find the associated transformation parameters,
a probabilistic approach, based on factored sampling, is invoked. We start from a state set containing a fixed
number of different candidate parameters whose probabilities are approximated based on the image information
at the landmark positions. Subsequent time frames are analyzed by factored sampling from this state set and
by superimposing a stochastic diffusion term on the parameters.
The algorithm is successfully applied to clinical 4D CT data. Landmarks have been placed manually to mark
the tumor or a similar structure in the initial image whose position is then tracked over time. We achieve a
processing rate of up to 12 image volumes per second. The accuracy of the tracking after five time steps is
measured based on expert placed landmarks. We achieve a mean landmark error of less than 2 mm in each
dimension in a region with radius of 25 mm around the target structure.},
year = {2013},
doi = {10.1117/12.2006842},
URL = { http://dx.doi.org/10.1117/12.2006842},
eprint = {}
}
Lars König, Nils Papenberg, Benjamin Haas, and Jan Modersitzki,
Deformable Registration for Adaptive Radiotherapy with Guaranteed Local Rigidity Constraints, in Varian Research Partnership Symposium , Atlanta, Georgia, USA , Mar.2013.
Bibtex: BibTeX
@INPROCEEDINGS{2013-Deformable,
	author = {K\"{o}nig, Lars and Papenberg, Nils and Haas, Benjamin and Modersitzki, Jan},
	booktitle = {Varian Research Partnership Symposium},
	title = {Deformable Registration for Adaptive Radiotherapy with Guaranteed Local Rigidity Constraints},
	year = {2013},
	address = {Atlanta, Georgia, USA},
	month = {March}	
}
[German] Lars Ruthotto, Siawoosh Mohammadi, Constantin Heck, Jan Modersitzki, and Nikolaus Weiskopf,
Hyperelastic Susceptibility Artifact Correction of DTI in SPM, in Bildverarbeitung für die Medizin 2013 , Meinzer, Hans-Peter and Deserno, Thomas Martin and Handels, Heinz and Tolxdorff, Thomas, Eds. Springer Berlin Heidelberg, 2013, pp. 344-349.
DOI:10.1007/978-3-642-36480-8_60
ISBN:978-3-642-36479-2
File: 978-3-642-36480-8_60
Bibtex: BibTeX
@incollection{2013-BVM-RMHMW,
	Author = {Ruthotto, Lars and Mohammadi, Siawoosh and Heck, Constantin and Modersitzki, Jan and Weiskopf, Nikolaus},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2013},
	Doi = {10.1007/978-3-642-36480-8_60},
	Editor = {Meinzer, Hans-Peter and Deserno, Thomas Martin and Handels, Heinz and Tolxdorff, Thomas},
	Isbn = {978-3-642-36479-2},
	Language = {German},
	Pages = {344-349},
	Publisher = {Springer Berlin Heidelberg},
	Series = {Informatik aktuell},
	Title = {Hyperelastic Susceptibility Artifact Correction of DTI in SPM},
	Url = {http://dx.doi.org/10.1007/978-3-642-36480-8_60},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-642-36480-8_60}}
Jan Rühaak, Stefan Heldmann, Till Kipshagen, and Bernd Fischer,
Highly Accurate Fast Lung CT Registration, in SPIE Medical Imaging 2013: Image Processing , Lake Buena Vista, Florida, USA , Feb.2013.
Bibtex: BibTeX
@INPROCEEDINGS{2013-SPIE-RHKF,
	author = {R\"{u}haak, Jan and Heldmann, Stefan and Kipshagen, Till and Fischer, Bernd},
	booktitle = {SPIE Medical Imaging 2013: Image Processing},
	title = {Highly Accurate Fast Lung CT Registration},
	year = {2013},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}
M. Burger, J. Modersitzki, and L. Ruthotto,
A hyperelastic regularization energy for image registration, SIAM Journal on Scientific Computing , vol. 35, no. 1, pp. B132--B148, 2013. SIAM.
File: 2012-09-05_BMR-Hyperelasticity.pdf
Bibtex: BibTeX
@article{BurgerEtAl2013,
  title={A hyperelastic regularization energy for image registration},
  author={Burger, M. and Modersitzki, J. and Ruthotto, L.},
  journal={SIAM Journal on Scientific Computing},
  volume={35},
  number={1},
  pages={B132--B148},
  year={2013},
  publisher={SIAM}
}
Thomas Peter, and Gerlind Plonka,
A Generalized Prony Method for Reconstruction of Sparse Sums of Eigenfunctions of Linear Operators. (revised preprint as download), Inverse Problems , vol. 29, no. 2, Jan. 2013.
File: Operator_Prony_revised2.pdf
Bibtex: BibTeX
@article{PP2013,
	author = {Peter, Thomas and Plonka, Gerlind},
	title = {A Generalized Prony Method for Reconstruction of Sparse Sums of Eigenfunctions of Linear Operators. (revised preprint as download)},
        journal={Inverse Problems},
  volume={29},
  number={2},
	year = {2013},
	month = {January}	
}
Sven Barendt, and Jan Modersitzki,
A variational model for SPECT reconstruction with a nonlinearly transformed attenuation prototype, International Journal of Computer Mathematics , vol. 90, no. 1, pp. 82-91, 2013.
Bibtex: BibTeX
@article{BarendtModersitzkiIJCM2013,
  author = {Barendt, Sven and Modersitzki, Jan},
  title = {A variational model for SPECT reconstruction with a nonlinearly transformed attenuation prototype},
  journal = {International Journal of Computer Mathematics},
  volume = {90},
  number = {1},
  pages = {82-91},
  year = {2013}
}
Janina Oetjen, Michaela Aichler, Dennis Trede, Jan Strehlow, Judith Berger, Stefan Heldmann, Michael Becker, Michael Gottschalk, Jan Hendrik Kobarg, Stefan Wirtz, Stefan Schiffler, Herbert Thiele, Axel Walch, Peter Maass, and Theodore Alexandrov,
MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation, Journal of Proteomics , vol. 90, pp. 52--60, 2013.
Bibtex: BibTeX
@article{2013-JP-OATSBHBGKWSTWMA,
	Author = {Oetjen, Janina and Aichler, Michaela and Trede, Dennis and Strehlow, Jan and Berger, Judith and Heldmann, Stefan and Becker, Michael and Gottschalk, Michael and Kobarg, Jan Hendrik and Wirtz, Stefan and Schiffler, Stefan and Thiele, Herbert and Walch, Axel and Maass, Peter and Alexandrov, Theodore},
	Journal = {Journal of Proteomics},
	Pages = {52--60},
	Title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation},
	Volume = {90},
	Year = {2013}}

2012

Fabian Gigengack, Lars Ruthotto, Martin Burger, Carsten H Wolters, Xiaoyi Jiang, and Klaus P Schäfers,
Motion Correction in Dual Gated Cardiac PET using Mass-Preserving Image Registration, IEEE Transactions on Medical Imaging , vol. 31, no. 3, pp. 698--712, 2012.
Bibtex: BibTeX
@article{2012-VAMPIRE-IEEE,
author = {Gigengack, Fabian and Ruthotto, Lars and Burger, Martin and Wolters, Carsten H and Jiang, Xiaoyi and Sch{\"a}fers, Klaus P},
title = {{Motion Correction in Dual Gated Cardiac PET using Mass-Preserving Image Registration}},
journal = {IEEE Transactions on Medical Imaging},
year = {2012},
volume = {31},
number = {3},
pages = {698--712},
}
F. Gigengack, L. Ruthotto, T. Kösters, X. Jiang, J. Modersitzki, M. Burger, C.H. Wolters, and K. Schäfers,
Pipeline for Motion Correction in Dual Gated PET, in Nuclear Science Symposium and Medical Imaging Confereence (NSS/MIC), 2012 IEEE , 2012. pp. 2983--2984.
Bibtex: BibTeX
@INPROCEEDINGS{2012-GigengackEtAl-NSS-MIC-B,
  author = {F. Gigengack and L. Ruthotto and T. K{\"o}sters and X. Jiang and
	J. Modersitzki and M. Burger and C.H. Wolters and K. Schäfers},
  title = {Pipeline for Motion Correction in Dual Gated PET},
  booktitle = {Nuclear Science Symposium and Medical Imaging Confereence (NSS/MIC), 2012 IEEE},
  year = {2012},
  pages = {2983--2984}
}
Lars Ruthotto,
Hyperelastic Image Registration - Theory, Numerical Methods, and Applications, Fachbereich Mathematik und Informatik, Westfälische Wilhelms-Universität Münster, 2012.
Bibtex: BibTeX
@phdthesis{2012-PhD-Ruthotto,
  Author = {Lars Ruthotto},
  Title = {Hyperelastic Image Registration - Theory, Numerical Methods, and Applications},
  School = {Fachbereich Mathematik und Informatik, Westfälische Wilhelms-Universität Münster},
  Year = {2012},
}
Fabian Gigengack, Lars Ruthotto, Xiaoyi Jiang, Jan Modersitzki, Martin Burger, Sven Hermann, and Klaus P. Schäfers,
Atlas-Based Whole-Body PET-CT Segmentation using a Passive Contour Distance, in Proceedings of the MICCAI Workshop on Medical Computer Vision 2012 , Springer LNCS, 2012. pp. 1--10.
Bibtex: BibTeX
@INPROCEEDINGS{2012-GigengackEtAl-MICCAI,
  author = {Gigengack, Fabian and Ruthotto, Lars and Jiang, Xiaoyi and Modersitzki,
	Jan and Burger, Martin and Hermann, Sven and Sch{\"a}fers, Klaus
	P.},
  title = {Atlas-Based Whole-Body {PET-CT} Segmentation using a Passive Contour
	Distance},
  booktitle = {Proceedings of the MICCAI Workshop on Medical Computer Vision 2012},
  year = {2012},
  pages = {1--10},
  publisher = {Springer LNCS}
}
L Ruthotto, H Kugel, J Olesch, B Fischer, J Modersitzki, M Burger, and CH Wolters,
Diffeomorphic Susceptibility Artefact Correction of Diffusion-Weighted Magnetic Resonance Images, Physics in Medicine and Biology , vol. 57, pp. 5715--5731, 2012.
File: 2012-RKOFMBW-EPI.pdf
Bibtex: BibTeX
@article{RuthottoEtAl2012,
author = {Ruthotto, L and Kugel, H and Olesch, J and Fischer, B and Modersitzki, J and Burger, M and Wolters, CH},
title = {Diffeomorphic Susceptibility Artefact Correction of Diffusion-Weighted Magnetic Resonance Images},
journal = {Physics in Medicine and Biology},
year = {2012},
volume={57},
pages = {5715--5731},
url={http://stacks.iop.org/0031-9155/57/5715}
}
L. Ruthotto, E. Hodneland, and J. Modersitzki,
Registration of Dynamic Contrast Enhanced MRI with Local Rigidity Constraint, in Biomedical Image Registration, 5th International Workshop {WBIR2012} , Dawant B.M., Fitzpatrick J.M., Rueckert D., and Christensen G.E., Eds. Springer, 2012.
File: 2012-03-26-WBIR-DCE.pdf
Bibtex: BibTeX
@inproceedings{2012-DCEMRI-WBIR,
	title={Registration of Dynamic Contrast Enhanced {MRI} with Local Rigidity Constraint},
  	author={Ruthotto, L. and Hodneland, E. and  Modersitzki,J.},
 	booktitle={Biomedical Image Registration, 5th International Workshop {WBIR2012}},
  	year={2012},
	editor={Dawant B.M., Fitzpatrick J.M., Rueckert D., and Christensen G.E.},
  	publisher={Springer}
}
Sven Barendt, and Jan Modersitzki,
SPECT Reconstruction with a Transformed Attenuation Prototype at Multiple Levels, in Bildverarbeitung für die Medizin 2012 , Springer, 2012. pp. 352-357.
Bibtex: BibTeX
@inproceedings{BarendtModersitzkiBVM2012,
  title={SPECT Reconstruction with a Transformed Attenuation Prototype at Multiple Levels},
  author={Barendt, Sven and Modersitzki, Jan},
 booktitle={Bildverarbeitung f{\"u}r die Medizin 2012},
 pages     = {352-357},
  year={2012},
  publisher={Springer}
}
L. Ruthotto, F. Gigengack, M. Burger, Wolters, X. Jiang, K. Schäfers, and J. Modersitzki,
A Simplified Pipeline for Motion Correction in Dual Gated Cardiac PET, in Bildverarbeitung für die Medizin 2012 , Springer, 2012.
Bibtex: BibTeX
@inproceedings{2012-VAMPIRE-BVM,
  title={A Simplified Pipeline for Motion Correction in Dual Gated Cardiac {PET}},
  author={Ruthotto, L. and Gigengack, F. and Burger, M. and Wolters, C.H., and Jiang, X. and Sch{\"a}fers, K. and           	
		  Modersitzki,J.},
 booktitle={Bildverarbeitung f{\"u}r die Medizin 2012},
  year={2012},
  publisher={Springer}
}
Jan Strehlow, Jan Rühaak, Christina Kluck, and Bernd Fischer,
Effiziente Verpunktung pulmonaler MR-Bilder zur Evaluierung von Registrierungsergebnissen, in Bildverarbeitung für die Medizin 2012 , Springer, 2012. pp. 219-224.
Bibtex: BibTeX
@INPROCEEDINGS{2012-BVM-SRKF,
   author = {Strehlow, Jan and R\"{u}haak, Jan and Kluck, Christina and Fischer, Bernd},
   booktitle = {Bildverarbeitung f{\"u}r die Medizin 2012},
   title = {Effiziente Verpunktung pulmonaler MR-Bilder zur Evaluierung von Registrierungsergebnissen},
   series = {Informatik aktuell},
   publisher = {Springer}
   year = {2012},   
   pages = {219-224},
}
Jan Rühaak, and Stefan Heldmann,
Variational Lung Registration with Explicit Boundary Alignment, Feb. 2012.
Bibtex: BibTeX
@misc{2012-RH-EMPIRE10,
  title={Variational Lung Registration with Explicit Boundary Alignment},
  author={Rühaak, Jan and Heldmann, Stefan},
  institution={The EMPIRE10 challenge},
  month = {February},
  year={2012}
}
Dennis Trede, Stefan Schiffler, Michael Becker, Stefan Wirtz, Klaus Steinhorst, Jan Strehlow, Michaela Aichler, Jan Hendrik Kobarg, Janina Oetjen, Stefan Heldmann, Axel Walch, Herbert Thiele, Peter Maass, and Theodore Alexandrov,
Exploring 3D MALDI imaging mass spectrometry data: 3D spatial segmentation of mouse kidney, Analytical Chemistry , vol. 84(14), pp. 6079-87, 2012.
Bibtex: BibTeX
@article{2012-AC-TSBWSSAKOHWTMA,
	Author = {Trede, Dennis and Schiffler, Stefan and Becker, Michael and Wirtz, Stefan and Steinhorst, Klaus and Strehlow, Jan and Aichler, Michaela and Kobarg, Jan Hendrik and Oetjen, Janina and Heldmann, Stefan and Walch, Axel and Thiele, Herbert and Maass, Peter and Alexandrov, Theodore},
	Journal = {Analytical Chemistry},
	Pages = {6079-87},
	Title = {Exploring 3D MALDI imaging mass spectrometry data: 3D spatial segmentation of mouse kidney},
	Volume = {84(14)},
	Year = {2012}}
H. Thiele, S. Heldmann, and B. Fischer,
3D Visualisierung von Organismen, in Proceedings der INFORMATIK 2012 , Goltz, U. and Magnor, M. and Appelrath, H-J and Matthies, HK and Balke, W-T and Wolf, L., Eds. Bonn: Gesellschaft für Informatik, 2012. pp. 1535--1545.
Bibtex: BibTeX
@inproceedings{2012-INF-THF,
	Address = {Bonn},
	Author = {Thiele, H. and Heldmann, S. and Fischer, B.},
	Booktitle = {Proceedings der INFORMATIK 2012},
	Editor = {Goltz, U. and Magnor, M. and Appelrath, H-J and Matthies, HK and Balke, W-T and Wolf, L.},
	Pages = {1535--1545},
	Publisher = {Gesellschaft f{\"u}r Informatik},
	Series = {GI-Editon Lecture Notes in Informatics},
	Title = {3D Visualisierung von Organismen},
	Volume = {208},
	Year = {2012}}

2011

Thomas Lange,
Modeling Prior Knowledge for Image Registration in Liver Surgery, Institute of Mathematics and Image Computing, University of L\"ubeck, 2011.
Bibtex: BibTeX
@phdthesis{2011-PhD-Lange,
  Author = {Thomas Lange},
  Title = {Modeling Prior Knowledge for Image Registration in Liver Surgery},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2011},
}
Britta Göbel,
Mathematische Modellierung des menschlichen Energiestoffwechsels: Die zentrale Rolle des Gehirns, Institute of Mathematics and Image Computing, University of L\"ubeck, 2011.
Bibtex: BibTeX
@phdthesis{2011-PhD-Goebel,
  Author = {Britta G\"obel},
  Title = {Mathematische Modellierung des menschlichen Energiestoffwechsels: Die zentrale Rolle des Gehirns},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2011},
}
F. Gigengack, L. Ruthotto, M. Burger, C.H. Wolters, X. Jiang, and K.P. Schäfers,
Mass-Preserving Motion Correction of PET: Displacement Field vs. Spline Transformation, in Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE , 2011. pp. 3088--3090.
Bibtex: BibTeX
@inproceedings{2011-VAPIRE-MICspline,
  title={Mass-Preserving Motion Correction of PET: Displacement Field vs. Spline Transformation},
  author={Gigengack, F. and Ruthotto, L. and Burger, M. and Wolters, C.H. and Jiang, X. and Sch{\"a}fers, K.P.},
 booktitle={Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE},
  year={2011},
   pages={3088--3090},
 organization={IEEE}
}
Jan Rühaak, Stefan Heldmann, and Bernd Fischer,
Improving Lung Registration by Incorporating Anatomical Knowledge: A Variational Approach, in Proc. Fourth International MICCAI Workshop on Pulmonary Image Analysis (PULMO 2011) , Toronto, Canada , Sep.2011.
Bibtex: BibTeX
@INPROCEEDINGS{2011-MICCAI-PULMO-RHF,
	author = {R\"{u}haak, Jan and Heldmann, Stefan and Fischer, Bernd},
	booktitle = {Proc. Fourth International MICCAI Workshop on Pulmonary Image Analysis (PULMO 2011)},
	title = {Improving Lung Registration by Incorporating Anatomical Knowledge: A Variational Approach},
	year = {2011},
	address = {Toronto, Canada},
	month = {September},
}
J. Hamer, M. Kleine, S. Barendt, J. Krajewski, J. Konitzer, E. Gáspár, B. Meller, J. Knobloch, M. Russlies, I. Buchmann, J. Barkhausen, J. Modersitzki, G. Ebel, and T. M. Buzug,
Molecular Imaging of Inflammations at Implant Interfaces (M4I) - Part of Molecular Imaging North Competence Center (MOIN CC), Biomed Tech , vol. 56, 2011.
Bibtex: BibTeX
@article{MOINCCBioTech2011,
  author = {J. Hamer and M. Kleine and S. Barendt and J. Krajewski and J. Konitzer and E. Gáspár and B. Meller and J. Knobloch and M. Russlies and I. Buchmann and J. Barkhausen and J. Modersitzki and G. Ebel and T. M. Buzug},
  title = {Molecular Imaging of Inflammations at Implant Interfaces (M4I) -
	Part of Molecular Imaging North Competence Center (MOIN CC)},
  journal = {Biomed Tech},
  year = {2011},
  volume = {56},
}
M. Chung, and B. Göbel,
Mathematical Modeling of the Human Energy Metabolism based on the Selfish Brain Theory, Advances in Systems Biology, Springer , vol. (in press), 2011.
Bibtex: BibTeX
@ARTICLE{2011-Springer-CG,
  author = {M. Chung and B. Göbel},
  title = {Mathematical Modeling of the Human Energy Metabolism based on the
	Selfish Brain Theory},
  journal = {Advances in Systems Biology, Springer},
  year = {2011},
  volume = {(in press)},
  owner = {BrittaGoebel},
  timestamp = {2011.05.15}
}
M. Chung, B. Göbel, A. Peters, K.M. Oltmanns, and A. Moser,
Mathematical modeling of the biphasic dopaminergic response to glucose, J Biomed Sci Eng , vol. 4, pp. 136-145, 2011.
Bibtex: BibTeX
@ARTICLE{2011-JBSE-CGPOM,
  author = {M. Chung and B. G\"obel and A. Peters and K.M. Oltmanns and A. Moser},
  title = {Mathematical modeling of the biphasic dopaminergic response to glucose},
  journal = {J Biomed Sci Eng},
  year = {2011},
  volume = {4},
  pages = {136-145},
  owner = {BrittaGoebel},
  timestamp = {2011.03.23}
}
B. Göbel, and D. Langemann,
Systemic investigation of a brain-centered model of the human energy metabolism, Theory Biosci , vol. 130, no. 1, pp. 5-18, 2011.
Bibtex: BibTeX
@ARTICLE{2011-TB-GL,
  author = {B. G\"obel and D. Langemann},
  title = {Systemic investigation of a brain-centered model of the human energy
	metabolism},
  journal = {Theory Biosci},
  year = {2011},
  volume = {130},
  pages = {5-18},
  number = {1},
  owner = {BrittaGoebel},
  timestamp = {2010.12.09}
}
Jan Hendrik Moltz, Stefan Braunewell, Jan Rühaak, Frank Heckel, Sebastiano Barbieri, Lennart Tautz, Horst Karl Hahn, and Heinz-Otto Peitgen,
Analysis of Variability in Manual Liver Tumor Delineation in CT Scans, in 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro , Chicago, Illinois, USA , Mar.2011.
Bibtex: BibTeX
@INPROCEEDINGS{2011-ISBI-MBRHBTHP,
	author = {Moltz, Jan Hendrik and Braunewell, Stefan and R\"{u}haak, Jan and Heckel, Frank and Barbieri, Sebastiano and Tautz, Lennart and Hahn, Horst Karl and Peitgen, Heinz-Otto},
	booktitle = {8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
	title = {Analysis of Variability in Manual Liver Tumor Delineation in CT Scans},
	year = {2011},
	address = {Chicago, Illinois, USA},
	month = {March}	
}
Veronika Zimmer, Nils Papenberg, Jan Modersitzki, and Bernd Fischer,
Bildregistrierung zur Verbrennungsanalyse, in Bildverarbeitung f\"ur die Medizin 2011 , H Handels, Eds. Springer, 2011. pp. 159--163.
Bibtex: BibTeX
@INPROCEEDINGS{2011-BVM-ZPMF,
  author = {Zimmer, Veronika and Papenberg, Nils and Modersitzki, Jan and Fischer,
	Bernd},
  title = {Bildregistrierung zur Verbrennungsanalyse},
  booktitle = {Bildverarbeitung f\"ur die Medizin 2011},
  year = {2011},
  editor = {H Handels},
  pages = {159--163},
  publisher = {Springer}
}
Sven Barendt, and Jan Modersitzki,
SPECT Reconstruction with a Nonlinear Transformed Attenuation Prototype, in Bildverarbeitung für die Medizin , 2011.
Bibtex: BibTeX
@inproceedings{2011-BVM-BM,
  author    = {Barendt, Sven and Modersitzki, Jan},
  title     = {SPECT Reconstruction with a Nonlinear Transformed Attenuation Prototype},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
  year      = {2011},
  Series = {Informatik aktuell},
  }
Janine Olesch, and Bernd Fischer,
Focussed registration of tracked 2D US to 3D CT data of the liver, in Bildverarbeitung für die Medizin , 2011.
Bibtex: BibTeX
@inproceedings{2011-BVM-OF,
  author    = {Olesch, Janine and Fischer, Bernd},
  title     = {Focussed registration of tracked 2D US to 3D CT data of the liver},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
  year      = {2011},
  Series = {Informatik aktuell},
  }
Janine Olesch, Björn Beuthien, Stefan Heldmann, Nils Papenberg, and Bernd Fischer,
Fast intra-operative nonlinear registration of 3D-CT to tracked, selected 2D-ultrasound slices, in SPIE Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling , Lake Buena Vista, Florida, USA , Feb.2011.
Bibtex: BibTeX
@INPROCEEDINGS{2011-SPIE-OBHPF,
	author = {Olesch, Janine and Beuthien, Björn and Heldmann, Stefan and Papenberg, Nils and Fischer, Bernd},
	booktitle = {SPIE Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling},
	title = {Fast intra-operative nonlinear registration of 3D-CT to tracked, selected 2D-ultrasound slices},
	year = {2011},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}
Jan Hendrik Moltz, Jan Rühaak, Horst Karl Hahn, and Heinz-Otto Peitgen,
A Novel Adaptive Scoring System for Segmentation Validation with Multiple Reference Masks, in SPIE Medical Imaging 2011: Image Processing , Lake Buena Vista, Florida, USA , Feb.2011.
Bibtex: BibTeX
@INPROCEEDINGS{2011-SPIE-MRHP,
	author = {Moltz, Jan Hendrik and R\"{u}haak, Jan and Hahn, Horst Karl and Peitgen, Heinz-Otto},
	booktitle = {SPIE Medical Imaging 2011: Image Processing},
	title = {A Novel Adaptive Scoring System for Segmentation Validation with Multiple Reference Masks},
	year = {2011},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}

2010

Stefan Heldmann, Björn Beuthien, Janine Olesch, Nils Papenberg, and Bernd Fischer,
Improved Minimal-Invasive Laparoscopic Liver Surgery by Registration of 3D CT and 2D Ultrasound Slices, in BMT 2010 - FAL-Sessions, Hot-Topic Sessions, Projektsessions (BMT 2010 - FAL-Sessions - Hot-Topic Sessions - Projektsessions) , Rostock, Germany , 2010.
File: 2010-BMT-HBPOF.pdf
Bibtex: BibTeX
@inproceedings{2010-BMT-HBOPF,
	Address = {Rostock, Germany},
	Author = {Heldmann, Stefan and Beuthien, Bj{\"o}rn  and Olesch, Janine and Papenberg, Nils and Fischer, Bernd},
	Booktitle = {BMT 2010 - FAL-Sessions, Hot-Topic Sessions, Projektsessions (BMT 2010 - FAL-Sessions - Hot-Topic Sessions - Projektsessions)},
	Title = {Improved Minimal-Invasive Laparoscopic Liver Surgery by Registration of 3D CT and 2D Ultrasound Slices},
	Year = {2010},
}
Jan Hendrik Moltz, Jan Rühaak, Christiane Engel, Ulrike Kayser, and Heinz-Otto Peitgen,
Validation of Liver Tumor Segmentation in CT Scans by Relating Manual and Algorithmic Performance - A Preliminary Study, in Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT 2010) , Beijing, China , Sep.2010.
File: download
Bibtex: BibTeX
@INPROCEEDINGS{2010-MICCAI-CIBT-MREKP,
	author = {Moltz, Jan Hendrik and R\"{u}haak, Jan and Engel, Christiane and Kayser, Ulrike and Peitgen, Heinz-Otto},
	booktitle = {Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT 2010)},
	title = {Validation of Liver Tumor Segmentation in CT Scans by Relating Manual and Algorithmic Performance - A Preliminary Study},
	year = {2010},
	address = {Beijing, China},
	month = {September},
	url = {http://midasjournal.com/download/viewpdf/754/1/download} 
}
Alvin Ihsani, Jan Modersitzki, and Troy Farncombe,
A Fully Automated Approach to Segmentation and Registration of 3D, Medical Image Data for Pulmonary Diagnosis, in Proceedings of the 3rd Workshop on Pulmonary Image Analysis, 2010 , Beijing , 2010. pp. 97--109.
Bibtex: BibTeX
@INPROCEEDINGS{2010-Beijing-IFM,
  author = {Alvin Ihsani and Jan Modersitzki and Troy Farncombe},
  title = {A Fully Automated Approach to Segmentation and Registration of {3D}
	Medical Image Data for Pulmonary Diagnosis},
  booktitle = {Proceedings of the 3rd Workshop on Pulmonary Image Analysis, 2010},
  year = {2010},
  pages = {97--109},
  address = {Beijing}
}
Bernd Fischer, Benoit M. Dawant, and Cristian Lorenz,
Biomedical Image Registration, 4th International Workshop, WBIR 2010., .... Springer, 2010.
Bibtex: BibTeX
@book{2010-WBIR-FDL,
	Author = {Fischer, Bernd and Dawant, Benoit M. and Lorenz, Cristian },
	Publisher = {Springer},
	Series = {Lecture Notes in Computer Science},
	Title = {Biomedical Image Registration, 4th International Workshop, WBIR 2010},
	Volume = {6204},
	Year = {2010}
}
Britta Göbel, Dirk Langemann, Kerstin M. Oltmanns, and Matthias Chung,
Compact Energy Metabolism Model: Brain Controlled Energy Supply, Journal of Theoretical Biology , vol. 264, pp. 1214-1224, 2010.
File: 5847c422c6ba837cd32d9438c0f4219e
Bibtex: BibTeX
@article{2010-JTB-GLOC,
title = {Compact Energy Metabolism Model: Brain Controlled Energy Supply},
journal = {Journal of Theoretical Biology},
volume = {264},
pages = {1214-1224},
year = {2010},
issn = {0022-5193},
url = {http://www.sciencedirect.com/science/article/B6WMD-4YM7FS0-1/2/5847c422c6ba837cd32d9438c0f4219e},
author = {G\"{o}bel, Britta and Langemann, Dirk and Oltmanns, Kerstin M. and Chung, Matthias},
keywords = {Energy metabolism},
keywords = {Glucose model},
keywords = {Dynamical system},
keywords = {Stability analysis},
keywords = {Model size reduction},
}
B. Beuthien, B. Papenberg, S. Heldmann, and B. Fischer,
Volume-constrained image registration for pre- and post-operative CT liver data, in SPIE Medical Imaging , San Diego, California, USA , Feb.2010.
File: 2010-SPIE-BPHF.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2010-SPIE-BPHF,
  author    = {Beuthien, B. and Papenberg, B. and Heldmann, S. and Fischer, B.},
  title     = {Volume-constrained image registration for pre- and post-operative {CT} liver data},
  booktitle = {SPIE Medical Imaging},
  year      = {2010},
  address   = {San Diego, California, USA},
  month     = {February}}
Janine Olesch, Lars Ruthotto, Harald Kugel, Stefan Skare, Bernd Fischer, and Carsten H. Wolters,
A Variational Approach for the Correction of Field-inhomogeneities in EPI Sequences, Benoit M. Dawant and David R. Haynor, Eds. SPIE, 2010. pp. 76230K.
File: 2010-SPIE-ORKSFW.pdf
Bibtex: BibTeX
@inproceedings{2010-SPIE-ORKSFW,
	Author = {Olesch, Janine and Ruthotto, Lars and Kugel, Harald and Skare, Stefan and Fischer, Bernd and Wolters, Carsten H.},
	Editor = {Benoit M. Dawant and David R. Haynor},
	Journal = {Medical Imaging 2010: Image Processing},
	Location = {San Diego, California, USA},
	Number = {1},
	Numpages = {8},
	Pages = {76230K},
	Publisher = {SPIE},
	Title = {A Variational Approach for the Correction of Field-inhomogeneities in EPI Sequences},
	Volume = {7623},
	Year = {2010}
}
Björn Beuthien, Ali Kamen, and Bernd Fischer,
Recursive Green's Function Registration, in Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) , 2010.
File: 2010-MICCAI-BKF_04.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2010-MICCAI-BKF,
  author = {Beuthien, Bj\"{o}rn and Kamen, Ali and Fischer, Bernd},
  title = {Recursive Green's Function Registration},
  booktitle = {Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)},
  year = {2010}
}
Eldad Haber, R. Horesh, and Jan Modersitzki,
Numerical Methods for Constrained Image Registration, Numerical Linear Algebra with Applications , vol. 17, no. 2-3, pp. 343--359, 2010.
Bibtex: BibTeX
@ARTICLE{2010-NLAA-HHM,
  author = {Haber, Eldad and Horesh, R. and Modersitzki, Jan},
  title = {Numerical Methods for Constrained Image Registration},
  journal = {Numerical Linear Algebra with Applications},
  volume = {17},
  number = {2-3},
  year = {2010},
  pages = {343--359},
 }
Christiane Pöschl, Jan Modersitzki, and Otmar Scherzer,
A Variational Setting for Volume Constrained Image Registration, Inverse Problems and Imaging , vol. X, no. 2-3, pp. 1-18, 2010.
File: 2010-IPI-PMS.pdf
Bibtex: BibTeX
@ARTICLE{2010-IPI-PMS,
  author = { P\"{o}schl, Christiane and Modersitzki, Jan and Scherzer, Otmar},
  title = {A Variational Setting for Volume Constrained Image Registration},
  journal = {Inverse Problems and Imaging},
  volume = {X},
  number = {2-3},
  year = {2010},
  pages = {1-18},
}
Heike Ruppertshofen, Sven Kabus, and Bernd Fischer,
Tensor Grid Based Image Registration with Application to Ventilation Estimation on 4D CT Lung Data, International Journal of Computer Assisted Radiology and Surgery , 2010.
File: 2010-IJCARS-RKF.pdf
Bibtex: BibTeX
@article{2010-IJCARS-RKF,
	Author = {Ruppertshofen, Heike and Kabus, Sven and Fischer, Bernd},
	Journal = {International Journal of Computer Assisted Radiology and Surgery},
	Title = {Tensor Grid Based Image Registration with Application to Ventilation Estimation on {4D CT} Lung Data},
	Year = {2010}
}
Stefan Heldmann,
Multimodal Registration of MR Images with a Novel Least-squares Distance Measure, SPIE, Feb.2010.
DOI:10.1117/12.844466
File: 2010-SPIE-H.pdf
Bibtex: BibTeX
@conference{2010-SPIE-H,
  author = {Heldmann, Stefan},
  title = {Multimodal Registration of {MR} Images with a Novel Least-squares Distance Measure},
  journal = {Medical Imaging 2010: Image Processing },
  Xvolume = {7623},
  year = {2010},
  publisher={SPIE},
  month={February},
  DOI={10.1117/12.844466},
  adress={San Diego},
}
Konstantin Ens,
Kombinierte Segmentierung und Registrierung, Institute of Mathematics, University of L\"ubeck, 2010.
Bibtex: BibTeX
@phdthesis{2010-PhD-Ens,
  Author = {Konstantin Ens},
  Title = {Kombinierte Segmentierung und Registrierung},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2010},
}
N. Papenberg, H. Schumacher, S. Heldmann, T. Böhler, D. Straaten, and S. Wirtz,
Multimodale Registrierung von Knochen-Szintigraphien und Röntgenbildern, in Bildverarbeitung für die Medizin , 2010. pp. 335--339.
Bibtex: BibTeX
@inproceedings{2010-BVM-PSHBSW,
	Author = {Papenberg, N. and Schumacher, H. and Heldmann, S. and B{\"o}hler, T. and van Straaten, D. and Wirtz, S.},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin},
	Pages = {335--339},
	Title = {Multimodale Registrierung von Knochen-Szintigraphien und R{\"o}ntgenbildern},
	Year = {2010}}

2009

Hanno Schumacher, Jan Modersitzki, and Bernd Fischer,
Combined Reconstruction and Motion Correction in SPECT Imaging, IEEE Transactions on Nuclear Science , vol. 56, pp. 73--80, 2009.
File: 2009-ITNS-SMF.pdf
Bibtex: BibTeX
@article{2009-ITNS-SMF,
	Author = {Schumacher, Hanno and Modersitzki, Jan and Fischer, Bernd},
	Journal = {IEEE Transactions on Nuclear Science},
	Pages = {73--80},
	Title = {Combined Reconstruction and Motion Correction in {SPECT} Imaging},
	Volume = {56},
	Year = {2009}
}
Thomas Lange, Nils Papenberg, Stefan Heldmann, Jan Modersitzki, Bernd Fischer, and Peter M. Schlag,
3D Ultrasound-CT Alignment of the Liver using Combined Landmark -Intensity Registration, International Journal of Computer Assisted Radiology and Surgery , vol. 4, no. 1, pp. 79--88, 2009.
File: 2008-IJCARS-LPHMFLS.pdf
Bibtex: BibTeX
@article{LangeEtAl2009,
	Author = {Lange, Thomas and Papenberg, Nils and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd and Schlag, Peter M.},
	Journal = {International Journal of Computer Assisted Radiology and Surgery},
	Number = {1},
	Pages = {79--88},
	Title = {3D Ultrasound--{CT} Alignment of the Liver using Combined Landmark--Intensity Registration},
	Volume = {4},
	Year = {2009}}
Jan Modersitzki,
FAIR: Flexible Algorithms for Image Registration., .... Philadelphia: SIAM, 2009.
Bibtex: BibTeX
@BOOK{2009-FAIR, 
  title = {{FAIR}: Flexible Algorithms for Image Registration},
  publisher = {SIAM},
  address = {Philadelphia},
  year = {2009},
  author = {Modersitzki, Jan},
}
Olesya Peshko, Jan Modersitzki, Terlaky Terlaky, C Menard, T. Craig, and Douglas Moseley,
Automatic localization and tracking of fiducial markers for organ motion analysis in image-guided radiation therapy, Proceedings of the SPIE 2010, Medical Imaging, 2009. pp. 1--4.
Bibtex: BibTeX
@INPROCEEDINGS{2009-SPIE-PMTMCM,
  author = {Peshko, Olesya and Modersitzki , Jan and Terlaky, Terlaky and Menard, C and Craig, T. and Moseley, Douglas},
  title = {Automatic localization and tracking of fiducial markers for organ motion analysis in image-guided radiation therapy},
  publisher = { Proceedings of the SPIE 2010, Medical Imaging}, 
  note = {(Submitted)},
  pages = {1--4}, 
}
Eldad Haber, Stefan Heldmann, and Jan Modersitzki,
A Scale-Space Approach to Landmark Constrained Image Registration, in Proceedings of the Second International Conference on Scale Space Methods and Variational Methods in Computer Vision (SSVM) , Springer LNCS, 2009. pp. 1-12.
File: 2009-SSVM-HHM.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2009-SSVM-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {A Scale-Space Approach to Landmark Constrained Image Registration},
  booktitle = {Proceedings of the Second International Conference on Scale Space Methods and  
               Variational Methods in Computer Vision (SSVM)},
  year = {2009},
  pages = {1-12},
  alteditor = {B de Moor and B Motmans},
  publisher = {Springer LNCS},
}
Konstantin Ens, Fabian Wenzel, Stewart Young, Jan Modersitzki, and Bernd Fischer,
Design of a Synthetic Database for the Validation of Non-linear Registration and Segmentation of MR Brain Images, in Proceedings of the SPIE 2009, Medical Imaging , J.P.W. Pluim and B.M. Dawant, Eds. SPIE, 2009.
File: 2009-SPIE-EWYMF.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2009-SPIE-EWYMF, 
  author = {Ens, Konstantin and  Wenzel, Fabian and Young, Stewart and Modersitzki, Jan and Fischer, Bernd},
  title = {Design of a Synthetic Database for the Validation of Non-linear Registration and Segmentation of {MR} Brain Images},
  booktitle = {Proceedings of the SPIE 2009, Medical Imaging},
  year = {2009},
  Editor = {J.P.W. Pluim and B.M. Dawant},
  Volume = {7259, 725933},
  Newpages = {304--313},
  publisher = {SPIE},
 }
Sven Barendt, Bernd Fischer, and Jan Modersitzki,
A Kernel Representation for Exponential Splines with Global Tension, in Proceedings of the SPIE 2009, Image Processing: Algorithms and Systems VII, San Jose , Jaakko T. Astola and Karen O. Egiazarian and Nasser M. Nasrabadi and Syed A. Rizvi, Eds. SPIE, 2009. pp. 72450I.
DOI:10.1117/12.810219
File: 2009-SPIE-BFM.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2009-SPIE-BMF, 
  author = {Barendt, Sven and Fischer, Bernd and  Modersitzki, Jan},
  editor = {Jaakko T. Astola and Karen O. Egiazarian and Nasser M. Nasrabadi and Syed A. Rizvi},
  title = {A Kernel Representation for Exponential Splines with Global Tension},
  publisher = {SPIE},
  year = {2009},
  volume = {7245},
  number = {1},
  eid = {72450I},
  numpages = {10},
  pages = {72450I},
  url = {http://link.aip.org/link/?PSI/7245/72450I/1},
  doi = {10.1117/12.810219},   
  note = {Accepted for publication},
  booktitle = {Proceedings of the SPIE 2009, Image Processing: Algorithms and Systems VII, 
  San Jose},
}
Eldad Haber, Stefan Heldmann, and Jan Modersitzki,
A Framework for Image-Based Constrained Registration with an Application to Local Rigidity, Linear Algebra and its Applications , vol. 431, pp. 459-470, 2009.
File: 2009-LAA-HHM.pdf
Bibtex: BibTeX
@ARTICLE{2009-LAA-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {A Framework for Image-Based Constrained Registration with an Application to Local Rigidity},
  journal = {Linear Algebra and its Applications},
  volume = {431},
  year = {2009},
  pages = {459-470},
 }
Christiane Pöschel, Jan Modersitzki, and Otmar Scherzer,
"A Variational Settingfor Volume Constrained Image Registration " Feb. 2009.
File: 2009-TR-PMS.pdf
Bibtex: BibTeX
@techreport{2009-TR-PMS,
  author = {P\"{o}schel, Christiane and Modersitzki, Jan and Scherzer, Otmar},
  title = {A Variational Settingfor Volume Constrained Image Registration },
  institution = {Joint Research Program of Industrial Geometry}, 
  year = {2009},
  month = {February},
}
Stefan Heldmann, and Nils Papenberg,
A Variational Approach for Volume-to-Slice Registration, vol. 5567, pp. 624-635, 2009. Springer Berlin/ Heidelberg.
DOI:10.1007/978-3-642-02256-2_52
ISBN:978-3-642-02255-5
File: 2009-SSVM-HP.pdf
Bibtex: BibTeX
@ARTICLE{2009-SSVM-HP,
  author = {Heldmann, Stefan and Papenberg, Nils},
  title = {A Variational Approach for Volume-to-Slice Registration},
  booktitle= {SSVM '09: Proceedings of the Second International Conference on Scale Space and Variational Methods in Computer Vision},
  Series = {LNCS}
  volume = {5567},
  year = {2009},
  location={Voss, Norway},
  publisher={Springer Berlin/ Heidelberg},
  pages = {624-635},
  DOI={10.1007/978-3-642-02256-2_52},
  ISBN={978-3-642-02255-5},
}
Stefan Heldmann, and Stephan Zidowitz,
Elastic Registration of Multiphase CT Images of Liver, in SPIE Medical Imaging 2009: Image Processing , SPIE, Mar.2009.
DOI:10.1117/12.811415
File: 2009-SPIE-HZ.pdf
Bibtex: BibTeX
@conference{2009-SPIE-HZ,
  author = {Heldmann, Stefan and Zidowitz, Stephan},
  title = {Elastic Registration of Multiphase {CT} Images of Liver},
  booktitle={SPIE Medical Imaging 2009: Image Processing},
  volume = {7259},
  year = {2009},
  month={March},
  publisher={SPIE},
  location={Lake Buena Vista, FL, USA },
  DOI={10.1117/12.811415},
}
Stefan Heldmann, and Nils Papenberg,
A Scale-Space Approach for Image Registration of Vessel Structures, Springer, 2009. pp. 137-141.
DOI:10.1007/978-3-540-93860-6_28
File: 2009-BVM-HP.pdf
Bibtex: BibTeX
@conference{2009-BVM-HP,
  author = {Heldmann, Stefan and Papenberg, Nils},
  title = {A Scale-Space Approach for Image Registration of Vessel Structures},
  journal = {Bildverarbeitung f\"{u}r die Medizin},
  Series = {Informatik aktuell},
  Xvolume = {7},
  year = {2009},
  publisher={Springer},
  pages = {137-141},
  DOI={10.1007/978-3-540-93860-6_28},
}
Nils Papenberg, Janine Olesch, Thomas Lange, Peter M. Schlag, and Bernd Fischer,
Landmark Constrained Non-parametric Image Registration with Isotropic Tolerances, in Bildverarbeitung für die Medizin , Hans-Peter Meinzer and Thomas Martin Deserno and Heinz Handels and Thomas Tolxdorff, Eds. Springer, 2009. pp. 122-126.
File: 2009-BVM-POLSF.pdf
Bibtex: BibTeX
@inproceedings{2009-BVM-POLSF,
  author    = {Papenberg, Nils and Olesch, Janine and Lange, Thomas and Schlag, Peter M. and Fischer, Bernd},
  title     = {Landmark Constrained Non-parametric Image Registration with Isotropic Tolerances},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
   editor    = {Hans-Peter Meinzer and Thomas Martin Deserno and Heinz Handels and Thomas Tolxdorff},
  year      = {2009},
  Series = {Informatik aktuell},
  pages     = {122-126},
  publisher = {Springer},
}
Thomas Lange, Nils Papenberg, Janine Olesch, Bernd Fischer, and Peter M. Schlag,
Landmark Constrained Non-rigid Image Registration with Anisotropic Tolerances, in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany , Olaf Dössel and Wolfgang C. Schlegel, Eds. Springer, 2009. pp. 2238--2241.
Bibtex: BibTeX
@inproceedings{2009-WCMP-LPOFS,
	Author = {Lange, Thomas and Papenberg, Nils and Olesch, Janine and Fischer, Bernd and Schlag, Peter M.},
	Title = {Landmark Constrained Non-rigid Image Registration with Anisotropic Tolerances},
	booktitle = {World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany},
	Editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel},
	Pages = {2238--2241},
	Publisher = {Springer},
	Series = {IFMBE Proceedings},
	Volume = {25/IV},
	Year = {2009}
}
Janine Olesch, Nils Papenberg, Thomas Lange, Matthias Conrad, and Bernd Fischer,
Matching CT and Ultrasound Data of the Liver by Landmark Constrained Image Registration, Miga, Michael I. and Wong, Kenneth H.., Eds. SPIE, 2009.
File: 2009-SPIE-OPLCF.pdf
Bibtex: BibTeX
@inproceedings{2009-SPIE-OPLCF,
	Author = {Olesch, Janine and Papenberg, Nils and Lange, Thomas and Conrad, Matthias and Fischer, Bernd},
	Editor = {Miga, Michael I. and  Wong, Kenneth H..},
	Title = {Matching {CT} and Ultrasound Data of the Liver by Landmark Constrained Image Registration},
	Journal = {Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling},
	Volume = {7261,72610G},
	Year = {2009},
	Numpages = {7},
	Publisher = {SPIE},
}
Konstantin Ens, Stefan Heldmann, Jan Modersitzki, and Bernd Fischer,
Improving a Registration and/or Segmentation Task by Incorporating Characteristics of the Displacement Field, in Proceedings of the SPIE 2009, Medical Imaging , JM Fitzpatrick and M Sonka, Eds. SPIE, 2009. pp. 304--313.
File: 2009-SPIE-EHMF.pdf
Bibtex: BibTeX
@INPROCEEDINGS{2009-SPIE-EHMF,
  	author = {Ens, Konstantin and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd},
 	 title = {Improving a Registration and/or Segmentation Task by Incorporating Characteristics of the Displacement Field},
  	booktitle = {Proceedings of the SPIE 2009, Medical Imaging},
  	year = {2009},
  	editor = {JM Fitzpatrick and M Sonka},
  	volume = {5370},
  	pages = {304--313},
  	publisher = {SPIE},
}
Hanno Schumacher, Jan Modersitzki, and Bernd Fischer,
Reconstruction and motion correction in SPECT imaging - a combined approach, in Proceedings of the 12th Korea-Germany joint workshop on Advanced Medical Image Processing , Munich , 2009. pp. 32 --41.
Bibtex: BibTeX
@inproceedings{2009-KOREA-SMF, 
	Address = {Munich},
	Author = {Schumacher,Hanno and Modersitzki, Jan and Fischer, Bernd},
	Booktitle = {Proceedings of the 12th Korea-Germany joint workshop on Advanced Medical Image Processing},
	Pages = {32 --41},
	Title = {Reconstruction and motion correction in {SPECT} imaging -- a combined approach},
	Year = {2009}
}
Heike Ruppertshofen, Sven Kabus, and Bernd Fischer,
Image Registration using Tensor Grids for Lung Ventilation Studies, in Bildverarbeitung für die Medizin 2009 , {H.-P. Meinzer} and T.M. Deserno and H. Handels and T. Tolxdoff, Eds. Springer, 2009. pp. 117 -- 121.
DOI:10.1007/978-3-540-93860-6_24
ISBN:978-3-540-93859-0
File: 2009-BVM-RKF.pdf
Bibtex: BibTeX
@conference{2009-BVM-RKF,
	Author = {Ruppertshofen, Heike  and Kabus, Sven and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2009},
	Editor = {{H.-P. Meinzer} and T.M. Deserno and H. Handels and T. Tolxdoff},
	Pages = {117 -- 121},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {Image Registration using Tensor Grids for Lung Ventilation Studies},
	Year = {2009}
	DOI={10.1007/978-3-540-93860-6_24},
	ISBN={978-3-540-93859-0},
}
Konstantin Ens, Fabian Wenzel, and Bernd Fischer,
Verbesserung der Symmetrie von Hirnaufnahmen entlang der Sagittalebene, in Bildverarbeitung für die Medizin 2009 , {H.-P. Meinzer} and T.M. Deserno and H Handels and T Tolxdoff, Eds. Springer Berlin/ Heidelberg, 2009. pp. 187 -- 191.
DOI:10.1007/978-3-540-93860-6_38
ISBN:978-3-540-93859-0
File: 2009-BVM-EWF.pdf
Bibtex: BibTeX
@conference{2009-BVM-EWF,
	Author = {Ens, Konstantin and Wenzel, Fabian and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2009},
	Editor = {{H.-P. Meinzer} and T.M. Deserno and H Handels and T Tolxdoff},
	Pages = {187 -- 191},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {Verbesserung der {S}ymmetrie von {H}irnaufnahmen entlang der {S}agittalebene},
	Year = {2009},
	Publisher={Springer Berlin/ Heidelberg},
	DOI={10.1007/978-3-540-93860-6_38},
	ISBN={978-3-540-93859-0},
}
Matthias Conrad, Christian Hubold, Bernd Fischer, and Achim Peters,
Modeling the Hypothalamus-Pituitary-Adrenal System: Homeostasis by Interacting Positive and Negative Feedback, Journal of Biological Physics , vol. 35, no. 2, pp. 149 -- 162, 2009. Springer.
DOI:10.1007/s10867-009-9134-3
File: 2009-JBP-CHFA.pdf
Bibtex: BibTeX
@article{2009-JBP-CHFA,
	Author = {Conrad, Matthias and Hubold, Christian and Fischer, Bernd and Peters, Achim},
	Journal = {Journal of Biological Physics},
	Pages = {149 -- 162},
	Title = {Modeling the Hypothalamus-Pituitary-Adrenal System: Homeostasis by Interacting Positive and Negative Feedback},
	Volume = {35},
	Number={2},
	Year = {2009},
	publisher={Springer}
	DOI={10.1007/s10867-009-9134-3},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10867-009-9134-3}
}
Hanno Schumacher,
Bewegungskorrektur in SPECT-Aufnahmen, Institute of Mathematics, University of L\"ubeck, 2009.
Bibtex: BibTeX
@phdthesis{2009-PhD-Schumacher,
  Author = {Hanno Schumacher},
  Title = {Bewegungskorrektur in SPECT-Aufnahmen},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2009},
}
Stefan Wirtz,
Registrierung von histologischen Schnitten, Institute of Mathematics, University of L\"ubeck, 2009.
Bibtex: BibTeX
@phdthesis{2009-PhD-Wirtz,
  Author = {Stefan Wirtz},
  Title = {Registrierung von histologischen Schnitten},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2009},
}

2008

Jan Modersitzki,
FLIRT with Rigidity‚Image Registration with a Local Non-rigidity Penalty, International Journal of Computer Vision , pp. 153-163, 2008. Springer Netherlands.
DOI:10.1007/s11263-007-0079-3
File: 2007-IJCV-M.pdf
Bibtex: BibTeX
@ARTICLE{2007-IJCV-M,
  author = {Modersitzki, Jan},
  title = {FLIRT with Rigidity‚Image Registration with a Local Non-rigidity Penalty},
  journal = {International Journal of Computer Vision},
  Xvolume = {76},
  Xnumber={2},
  year = {2008},
  publisher={Springer Netherlands},
  pages = {153-163},
  DOI={10.1007/s11263-007-0079-3},
  ISSN={0920-5691 (Print) 1573-1405 (Online)},
}
Dennis Saering,
Segmentierung und Interpolation von 4D-MRT-Bildsequenzen zur Funktionsanalyse des linken Ventrikels, Institute of Mathematics and Image Computing, University of L\"ubeck, 2008.
Bibtex: BibTeX
@phdthesis{2008-PhD-Saering,
  Author = {Dennis Saering},
  Title = {Segmentierung und Interpolation von 4D-MRT-Bildsequenzen zur Funktionsanalyse des linken Ventrikels},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2008},
}
Nils Papenberg,
Ein genereller Registrierungsansatz mit Anwendung in der navigierten Leberchirurgie, Institute of Mathematics, University of L\"ubeck, 2008.
Bibtex: BibTeX
@phdthesis{2008-PhD-Papenberg,
  Author = {Nils Papenberg},
  Title = {Ein genereller Registrierungsansatz mit Anwendung in der navigierten Leberchirurgie},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2008},
}
Eldad Haber, Stefan Heldmann, and Jan Modersitzki,
Adaptive Mesh Refinement for Nonparametric Image Registration, SIAM Journal on Scientific Computing , vol. 30, no. 6, pp. 3012-3027, 2008. SIAM.
DOI:10.1137/070687724
File: 2008-SIAM-HHM_01.pdf
Bibtex: BibTeX
@ARTICLE{2008-SIAM-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {Adaptive Mesh Refinement for Nonparametric Image Registration},
  journal = {SIAM Journal on Scientific Computing},
  volume = {30},
  number={6},
  year = {2008},
  publisher={SIAM},
  pages = {3012-3027},
  DOI={10.1137/070687724},
  url = {http://link.aip.org/link/?SCE/30/3012},
}
Bernd Fischer, Eldad Haber, and Jan Modersitzki,
Mathematics Meets Medicine, an Optimal Alignment, SIAG/OPT Views and News , vol. 19, no. 2, pp. 1-7, 2008.
File: 2008-SIAG-FHM_01.pdf
Bibtex: BibTeX
@ARTICLE{2008-SIAG-FHM,
  author = {Fischer, Bernd and Haber, Eldad and Moderstitzki, Jan},
  title = {Mathematics Meets Medicine, an Optimal Alignment},
  journal = {SIAG/OPT Views and News},
  volume = {19},
  number={2},
  year = {2008},
  pages = {1-7},
}
Jan Modersitzki, and Bernd Fischer,
Ill-posed Medicine‚ an Introduction to Image Registration, Inverse Problems , vol. 24, no. 3, pp. 1-19, 2008.
DOI:10.1088/0266-5611/24/3/034008
File: 2008-IP-FM.pdf
Bibtex: BibTeX
@ARTICLE{2008-IP-FM,
  author = {Moderstitzki, Jan and Fischer, Bernd},
  title = {Ill-posed Medicine‚ an Introduction to Image Registration},
  journal = {Inverse Problems},
  volume = {24},
  number={3}
  year = {2008},
  pages = {1-19},
  DOI={10.1088/0266-5611/24/3/034008},
}
Nils Papenberg, Jan Modersitzki, and Bernd Fischer,
Registrierung im Fokus, T. Toldoff and J. Braun and T.M. Deserno and H. Handels and A. Horsch and {H.-P. Meinzer}, Eds. Springer Berlin / Heidelberg, 2008. pp. 138-142.
DOI:10.1007/978-3-540-78640-5
ISBN:978-3-540-78639-9 (Print), 978-3-540-78640-5 (Online)
File: 2008-BVM-PMF_02.pdf
Bibtex: BibTeX
@conference{2008-BVM-PMF,
  author = {Papenberg, Nils and Modersitzki, Jan and Fischer, Bernd},
  title = {{R}egistrierung im {F}okus: {B}eschleunigung {V}ariationeller {M}ethoden f\"{u}r die {B}ildregistrierung},
  book={{B}ildverarbeitung f\"{u}r die {M}edizin},
  Editor = {T. Toldoff and J. Braun and T.M. Deserno and H. Handels and A. Horsch and {H.-P. Meinzer}},
  volume = {7},
  year = {2008},
  publisher={Springer Berlin / Heidelberg},
  pages = {138-142},
  Title = {Registrierung im Fokus},
  Series = {Informatik aktuell},
  DOI={10.1007/978-3-540-78640-5},
  ISSN={1431-472X},
  ISBN={978-3-540-78639-9 (Print), 978-3-540-78640-5 (Online)},
}
Papenberg, Thomas Lange, Jan Modersitzki, Peter M. Schlag, and Bernd Fischer,
Image Registration for CT and Intra-operative Ultrasound Data of the Liver, in Medical Imaging 2008: Image Processing , MI Miga and KR Cleary, Eds. SPIE, 2008. pp. 1-5.
DOI:10.1117/12.770105
File: 2008-SPIE-PLMSF.pdf
Bibtex: BibTeX
@conference{2008-SPIE-PLMSF,
  author = {Papenberg, Nils, and Lange, Thomas and Modersitzki, Jan and Schlag, Peter M. and Fischer, Bernd},
  title = {Image Registration for {CT} and Intra-operative Ultrasound Data of the Liver},
  Booktitle = {Medical Imaging 2008: Image Processing},
  editor = {MI Miga and KR Cleary},  
  volume = {6918},
  publisher = {SPIE},
  year = {2008},
  pages = {1-5},
  DOI={10.1117/12.770105},
}
Hanno Schumacher, Stefan Heldmann, Eldad Haber, and Bernd Fischer,
Iterative Reconstruction of SPECT Images using Adaptive Multil-Level Refinement, in Bildverarbeitung für die Medizin 2008 , 2008.
File: 2008-BVM-SHHF.pdf
Bibtex: BibTeX
@inproceedings{2008-BVM-SHHF,
	Author = {Schumacher, Hanno and Heldmann, Stefan and Haber, Eldad and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2008},
	Title = {Iterative Reconstruction of SPECT Images using Adaptive Multil-Level Refinement},
	Year = {2008}}
	Editor = {T. Tolxdoff and J. Braun and T.M. Deserno and H. Handels and A. Horsch and {H.-P. Meinzer}},
	Pages = {318 -- 323},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Year = {2008}
	ISBN={ 978-3-540-78639-9},
}
Konstantin Ens, Jens Berg, Sven Kabus, Cristian Lorenz, and Bernd Fischer,
A Unified Framework for Joint Registration and Segmentation, in Medical Imaging 2008: Image Processing , J.P.W. Pluim and J.M. Reinhardt, Eds. 2008.
File: 2008-SPIE-EBKLF.pdf
Bibtex: BibTeX
@conference{2008-SPIE-EBKLF,
	Author = {Ens, Konstantin and von Berg, Jens and Kabus,  Sven and Lorenz,  Cristian and Fischer, Bernd},
	Booktitle = {Medical Imaging 2008: Image Processing},
	Editor = {J.P.W. Pluim and J.M. Reinhardt},
	Organization = {SPIE},
	Title = {A Unified Framework for Joint Registration and Segmentation},
	Volume = {6914, 691406},
	Year = {2008}
}
Sven Kabus, Florian Müller, Rafael Wiemker, and Bernd Fischer,
Robust Lung Nodule Growth Measurement by Combining Registration and Segmentation, in The First International Workshop on Pulmonary Image Analysis, MICCAI , M. Brown and M. de Bruijne and B. van Ginneken and A. Kiraly and J.-M. Kuhnigk and C. Lorenz and K. Mori and J.M. Reinhardt, Eds. 2008. pp. 15--23.
File: 2008-MICCAI-KMWB.pdf
Bibtex: BibTeX
@conference{2008-MICCAI-KMWB,
	Author = {Kabus, Sven and M{\"u}ller, Florian and Wiemker, Rafael and Fischer, Bernd},
	Booktitle = {The First International Workshop on Pulmonary Image Analysis, MICCAI},
	Editor = {M. Brown and M. de Bruijne and B. van Ginneken and A. Kiraly and J.-M. Kuhnigk and C. Lorenz and K. Mori and J.M. Reinhardt},
	Pages = {15--23},
	Title = {Robust Lung Nodule Growth Measurement by Combining Registration and Segmentation},
	Year = {2008}
}
Konstantin Ens, Jens Berg, and Fischer Bernd,
A Communication Term for the Combined Registration and Segmentation, in ECIFMBE 2008- IFMBE Proceedings , J. Vander Sloten and P. Verdonck and M. Nyssen and J. Haueisen, Eds. IFMBE Proceedings, 2008. pp. 673--675.
DOI:10.1007/978-3-540-89208-3_160
File: 2008-IFMBE-EBF.pdf
Bibtex: BibTeX
@conference{2008-IFMBE-EBF,
	Author = {Ens, Konstantin and von Berg, Jens and Bernd, Fischer},
	Booktitle = {ECIFMBE 2008- IFMBE Proceedings},
	Editor = {J. Vander Sloten and P. Verdonck and M. Nyssen and J. Haueisen},
	Pages = {673--675},
	Publisher = {IFMBE Proceedings},
	Title = {A Communication Term for the Combined Registration and Segmentation},
	Volume = {22},
	Year = {2008}
	DOI={10.1007/978-3-540-89208-3_160},
}
Martin Ludwig, Jochim Koch, and Bernd Fischer,
An Application of the Finite Volume Method to the Bio-heat-transfer-equation in Premature Infants, ETNA , vol. 28, pp. 136--148, 2008.
File: 2008-ETNA-LKF.pdf
Bibtex: BibTeX
@article{2008-ETNA-LKF,
	Author = {Ludwig, Martin and Koch, Jochim and Fischer, Bernd},
	Journal = {ETNA},
	Pages = {136--148},
	Title = {An Application of the Finite Volume Method to the Bio-heat-transfer-equation in Premature Infants},
	Volume = {28},
	Year = {2008}
}