Publications: MIC

Publications

2023

Bednarski, Danielle and Lellmann, Jan: EmNeF: Neural Fields for Embedded Variational Problems in Imaging. in Scale Space and Variational Methods in Computer Vision, pp. 137-148, Springer International Publishing, Cham, 2023

@InProceedings{bednarski2023emnef,
  author    = {Bednarski, Danielle and Lellmann, Jan},
  title     = {EmNeF: Neural Fields for Embedded Variational Problems in Imaging},
  booktitle = {Scale Space and Variational Methods in Computer Vision},
  year      = {2023},
  editor    = {Calatroni, Luca and Donatelli, Marco and Morigi, Serena and Prato, Marco and Santacesaria, Matteo},
  pages     = {137--148},
  address   = {Cham},
  publisher = {Springer International Publishing},
  doi       = {https://doi.org/10.1007/978-3-031-31975-4_11},
  isbn      = {978-3-031-31975-4},
 url = {https://link.springer.com/chapter/10.1007/978-3-031-31975-4_11},
}

Frederic Georg Kanter: Deep Learning for Mass Spectrometry Imaging and Image Registration. 2023

@phdthesis{2023-PhD-Kanter,
  Author = {{Frederic Georg Kanter}},
  Title = {Deep Learning for Mass Spectrometry Imaging and Image Registration},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2023},
}

Kanter, Frederic and Lellmann, Jan and Thiele, Herbert and Kalloger, Steve and Schaeffer, David F and Wellmann, Axel and Klein, Oliver: Classification of Pancreatic Ductal Adenocarcinoma Using MALDI Mass Spectrometry Imaging Combined with Neural Networks. Cancers, no. 15, pp. 686, MDPI, 2023

@article{kanter2023classification,
  title={Classification of Pancreatic Ductal Adenocarcinoma Using MALDI Mass Spectrometry Imaging Combined with Neural Networks},
  author={Kanter, Frederic and Lellmann, Jan and Thiele, Herbert and Kalloger, Steve and Schaeffer, David F and Wellmann, Axel and Klein, Oliver},
  journal={Cancers},
  volume={15},
  number={3},
  pages={686},
  year={2023},
  publisher={MDPI}
}

2022

Hering, Alessa and Peisen, Felix and Moltz, Jan Hendrik: Towards more efficient tumor follow-up assessment using AI assistance. in Medical Imaging with Deep Learning, 2022

@inproceedings{hering2022towards,
  title={Towards more efficient tumor follow-up assessment using AI assistance},
  author={Hering, Alessa and Peisen, Felix and Moltz, Jan Hendrik},
  booktitle={Medical Imaging with Deep Learning},
  year={2022}
}

Ramzi, Zaccharie and Mannel, Florian and Bai, Shaojie and Starck, Jean-Luc and Ciuciu, Philippe and Moreau, Thomas: SHINE: SHaring the INverse Estimate from the forward pass for bi-level optimization and implicit models. 2022

@Article{Mannel5,
title={{SHINE}: {SH}aring the {IN}verse Estimate from the forward pass for bi-level optimization and implicit models},
author={Ramzi, Zaccharie and Mannel, Florian and Bai, Shaojie and Starck, Jean-Luc and Ciuciu, Philippe and Moreau, Thomas},
FJournal={The Tenth International Conference on Learning Representations (ICLR)},
year={2022},
Language={English},
url={https://openreview.net/forum?id=-ApAkox5mp}
}

Häger, Stephanie and Lange, Annkristin and Heldmann, Stefan and Modersitzki, Jan and Petersik, Andreas and Schröder, Manuel and Gottschling, Heiko and Lieth, Thomas and Zähringer, Erich and Moltz, Jan H: Robust Intensity-based Initialization for 2D-3D Pelvis Registration (RobIn). in Bildverarbeitung für die Medizin 2022, pp. 69-74, Springer, 2022

@incollection{hager2022robin,
  title={Robust Intensity-based Initialization for 2D-3D Pelvis Registration
(RobIn)},
  author={Häger, Stephanie and Lange, Annkristin and Heldmann, Stefan {and} Modersitzki, Jan and Petersik, Andreas and Schröder, Manuel and Gottschling, Heiko and Lieth, Thomas and Zähringer, Erich and Moltz, Jan H},
  booktitle={Bildverarbeitung für die Medizin 2022},
  pages={69--74},
  year={2022},
  publisher={Springer}
}

Miesen, Laura and Bándi, Péter and Willemsen, Brigith and Mooren, Fieke and Strieder, Thiago and Boldrini, Eva and Drenic, Vedran and Eymael, Jennifer and Wetzels, Roy and Lotz, Johannes and Weiss, Nick and Steenbergen, Eric and van Kuppevelt, Toin H. and van Erp, Merijn and van der Laak, Jeroen and Endlich, Nicole and Moeller, Marcus J. and Wetzels, Jack F. M. and Jansen, Jitske and Smeets, Bart: Parietal epithelial cells maintain the epithelial cell continuum forming Bowman`s space in focal segmental glomerulosclerosis. Disease Models & Mechanisms, no. 15, The Company of Biologists, mar, 2022

@article{Miesen_2022, 
doi={10.1242/dmm.046342}, 
url={https://doi.org/10.1242%2Fdmm.046342}, 
year={2022}, 
month={mar}, 
publisher={The Company of Biologists}, 
volume={15}, 
number={3}, 
author={Miesen, Laura and Bándi, Péter and Willemsen, Brigith and Mooren, Fieke and Strieder, Thiago and Boldrini, Eva  and Drenic, Vedran and Eymael, Jennifer and Wetzels, Roy and Lotz, Johannes and Weiss, Nick and  Steenbergen, Eric and van Kuppevelt, Toin H. and van Erp, Merijn and van der Laak, Jeroen and Endlich, Nicole and Moeller, Marcus J. and Wetzels, Jack F. M. and Jansen, Jitske and Smeets, Bart}, 
title={Parietal epithelial cells maintain the epithelial cell continuum forming Bowman's space in focal segmental glomerulosclerosis}, 
journal={Disease Models & Mechanisms}
}

Mannel, Florian: On the convergence of Broyden’s method and some accelerated schemes for singular problems. pp. 1-29, 2022

@Article{Mannel2,
Author={{Mannel, Florian}},
Title={{On the convergence of Broyden’s method and some accelerated schemes for singular problems}},
FJournal={{IMA Journal of Numerical Analysis}},
Volume={},
Number={},
Pages={1--29},
Year={2022},
Language={English},
DOI= 10.1093/imanum/drab096},
eprint={https://academic.oup.com/imajna/advance-article-pdf/doi/10.1093/imanum/drab096/42198372/drab096.pdf},
}

Danielle Bednarski and Jan Lellmann: Inverse Scale Space Iterations for Non-Convex Variational Problems: The Continuous and Discrete Case. J Math Imaging Vis, 2022

@Article{bednarski2022inverse,
  author  = {Danielle Bednarski and Jan Lellmann},
  title   = {Inverse Scale Space Iterations for Non-Convex Variational Problems: The Continuous and Discrete Case},
  journal = {J Math Imaging Vis},
  year    = {2022},
  doi     = {10.1007/s10851-022-01125-8},
  url = {https://link.springer.com/article/10.1007/s10851-022-01125-8},
}

Jäckle, Sonja and Alpers, Rieke and Kühne, Lisa and Schumacher, Jakob and Geisler, Benjamin and Westphal, Max: EsteR-A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities. in German Medical Data Sciences 2022-Future Medicine: More Precise, More Integrative, More Sustainable!, pp. 17-24, IOS Press, 2022

@incollection{jackle2022ester,
  title={EsteR--A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities},
  author={J{\"a}ckle, Sonja and Alpers, Rieke and K{\"u}hne, Lisa and Schumacher, Jakob and Geisler, Benjamin and Westphal, Max},
  booktitle={German Medical Data Sciences 2022--Future Medicine: More Precise, More Integrative, More Sustainable!},
  pages={17--24},
  year={2022},
  publisher={IOS Press}
}

Haase, Roland and Heldmann, Stefan and Lellmann, Jan: Deformable groupwise image registration using low-rank and sparse decomposition. Journal of Mathematical Imaging and Vision, no. 64, pp. 194-211, Springer, 2022

@article{haase2022deformable,
  title={Deformable groupwise image registration using low-rank and sparse decomposition},
  author={Haase, Roland and Heldmann, Stefan and Lellmann, Jan},
  journal={Journal of Mathematical Imaging and Vision},
  volume={64},
  number={2},
  pages={194--211},
  year={2022},
  publisher={Springer}
}

Hansen, Lasse and Hering, Alessa and Großbröhmer, Christoph and Heinrich, Mattias P: Continuous benchmarking in medical image registration-review of the current state of the Learn2Reg challenge. Medical Imaging with Deep Learning, 2022

@article{hansen2022continuous,
  title={Continuous benchmarking in medical image registration-review of the current state of the Learn2Reg challenge},
  author={Hansen, Lasse and Hering, Alessa and Großbröhmer, Christoph and Heinrich, Mattias P},
  journal={Medical Imaging with Deep Learning},
  year={2022}
}

Peisen, Felix and Hänsch, Annika and Hering, Alessa and Brendlin, Andreas S and Afat, Saif and Nikolaou, Konstantin and Gatidis, Sergios and Eigentler, Thomas and Amaral, Teresa and Moltz, Jan H and others: Combination of Whole-Body Baseline CT Radiomics and Clinical Parameters to Predict Response and Survival in a Stage-IV Melanoma Cohort Undergoing Immunotherapy. Cancers, no. 14, pp. 2992, Multidisciplinary Digital Publishing Institute, 2022

@article{peisen2022combination,
  title={Combination of Whole-Body Baseline CT Radiomics and Clinical Parameters to Predict Response and Survival in a Stage-IV Melanoma Cohort Undergoing Immunotherapy},
  author={Peisen, Felix and H{\"a}nsch, Annika and Hering, Alessa and Brendlin, Andreas S and Afat, Saif and Nikolaou, Konstantin and Gatidis, Sergios and Eigentler, Thomas and Amaral, Teresa and Moltz, Jan H and others},
  journal={Cancers},
  volume={14},
  number={12},
  pages={2992},
  year={2022},
  publisher={Multidisciplinary Digital Publishing Institute}
}

Budelmann, Daniel and Laue, Hendrick and Weiss, Nick and Dahmen, Uta and D’Alessandro, Lorenza A. and Biermayer , Ina and Klingmüller, Ursula and Ghallab, Ahmed and Hassan, Reham and Begher-Tibbe, Brigitte and Hengstler, Jan G. and Schwen, Lars Ole: Automated Detection of Portal Fields and Central Veins in Whole-Slide Images of Liver Tissue. Journal of Pathology Informatics, no. 13, pp. 100001, 2022

@article{Budelmann2022100001,
title={Automated Detection of Portal Fields and Central Veins in
Whole-Slide Images of Liver Tissue},
journal={Journal of Pathology Informatics},
volume={13},
pages={100001},
year={2022},
issn={2153-3539},
doi={https://doi.org/10.1016/j.jpi.2022.100001},
url={https://www.sciencedirect.com/science/article/pii/S2153353922000013},
author={Budelmann, Daniel and Laue, Hendrick and Weiss, Nick and Dahmen, Uta and D’Alessandro, Lorenza A. and Biermayer , Ina and Klingmüller, Ursula and Ghallab, Ahmed and Hassan, Reham and Begher-Tibbe, Brigitte and Hengstler, Jan G. and Schwen, Lars Ole},
keywords={liver, portal field, central vein, object detection,
convolutional neural network, zonated quantification}
}

Kuete Meli, N. and Mannel, F. and Lellmann, J.: An Iterative Quantum Approach for Transformation Estimation From Point Sets. in Computer Vision and Pattern Recognition, pp. 529-537, 2022

@inproceedings{Meli2022,
  title={An Iterative Quantum Approach for Transformation Estimation From Point Sets},
  author={Kuete Meli, N. and Mannel, F. and Lellmann, J.},
  booktitle={Computer Vision and Pattern Recognition},
  pages={529--537},
  year={2022}
}

Hafemeyer, Dominik and Mannel, Florian: A path-following inexact Newton method for PDE-constrained optimal control in BV. COAP, no. 82, pp. 753-794, 2022

@Article{Mannel1,
Author={Hafemeyer, Dominik and Mannel, Florian},
Title={A path-following inexact Newton method for {PDE}-constrained optimal control in {BV}},
FJournal={{Computational Optimization and Applications}},
Journal={{COAP}},
Volume={82},
Number={3},
Pages={753--794},
Year={2022},
Language={English},
doi = {10.1007/s10589-022-00370-2},
}

Mannel, Florian and Rund, Armin: A hybrid semismooth quasi-Newton method for structured nonsmooth operator equations in Banach spaces. JoCA, no. 29, pp. 183-204, 2022

@Article{Mannel3,
Author={{Mannel, Florian and Rund, Armin}},
Title={{A hybrid semismooth quasi-Newton method for structured nonsmooth operator equations in Banach spaces}},
FJournal={{Journal of Convex Analysis}},
Journal={{JoCA}},
Volume={29},
Number={1},
Pages={183--204},
Year={2022},
Language={English},
url={https://www.heldermann.de/JCA/JCA29/JCA291/jca29011.htm},
}

Kanter, Frederic and Lellmann, Jan: A Flexible Meta Learning Model for Image Registration. in Proceedings of The 5th International Conference on Medical Imaging with Deep Learning, no. 172, pp. 638-652, PMLR, 06-08 Jul, 2022

@InProceedings{pmlr-v172-kanter22a,
title = {A Flexible Meta Learning Model for Image Registration},
author = {Kanter, Frederic and Lellmann, Jan},
booktitle = {Proceedings of The 5th International Conference on Medical Imaging with Deep Learning},
pages = {638-652},
year = {2022},
editor = {Konukoglu, Ender and Menze, Bjoern and Venkataraman, Archana and Baumgartner, Christian and Dou, Qi and Albarqouni, Shadi},  
volume =  {172},  
series =  {Proceedings of Machine Learning Research},  
month =  {06--08 Jul},  
publisher = {PMLR}
}

Jäckle, Sonja and Eixmann, Tim and Matysiak, Florian and Sieren, Malte M and Horn, Marco and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Pätz, Torben: 3D Stent Graft Guidance Based on Tracking Systems. in Bildverarbeitung für die Medizin 2022, pp. 253-253, Springer, 2022

@incollection{jackle20223d,
  title={3D Stent Graft Guidance Based on Tracking Systems},
  author={J{\"a}ckle, Sonja and Eixmann, Tim and Matysiak, Florian and Sieren, Malte M and Horn, Marco and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2022},
  pages={253--253},
  year={2022},
  publisher={Springer}
}

2021

Hering, Alessa and Peisen, Felix and Amaral, Teresa and Gatidis, Sergios and Eigentler, Thomas and Othman, Ahmed and Moltz, Jan Hendrik: Whole-Body Soft-Tissue Lesion Tracking and Segmentation in Longitudinal CT Imaging Studies. in Medical Imaging with Deep Learning, pp. 312-326, 2021

@inproceedings{hering2021whole,
  title={Whole-Body Soft-Tissue Lesion Tracking and Segmentation in Longitudinal CT Imaging Studies},
  author={Hering, Alessa and Peisen, Felix and Amaral, Teresa and Gatidis, Sergios and Eigentler, Thomas and Othman, Ahmed and Moltz, Jan Hendrik},
  booktitle={Medical Imaging with Deep Learning},
  pages={312--326},
  year={2021},
  organization={PMLR}
}

Kai Brehmer: SqN: A Novel Distance Measure for Multiple Images and Applications. 2021

@phdthesis{2021-PhD-Brehmer,
  Author = {{Kai Brehmer}},
  Title = {SqN: A Novel Distance Measure for Multiple Images and Applications},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2021},
}

Roth, Holger R and Xu, Ziyue and Diez, Carlos Tor and Jacob, Ramon Sanchez and Zember, Jonathan and Molto, Jose and Li, Wenqi and Xu, Sheng and Turkbey, Baris and Turkbey, Evrim and others: Rapid artificial intelligence solutions in a pandemic-the COVID-19-20 lung CT lesion segmentation challenge. Research Square, American Journal Experts, 2021

@article{roth2021rapid,
  title={Rapid artificial intelligence solutions in a pandemic-the COVID-19-20 lung CT lesion segmentation challenge},
  author={Roth, Holger R and Xu, Ziyue and Diez, Carlos Tor and Jacob, Ramon Sanchez and Zember, Jonathan and Molto, Jose and Li, Wenqi and Xu, Sheng and Turkbey, Baris and Turkbey, Evrim and others},
  journal={Research Square},
  year={2021},
  publisher={American Journal Experts}
}

Sieren, Malte Maria and Jäckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and Matysiak, Florian and Preuss, Mark and García-Vázquez, Verónica and Stahlberg, Erik and Kleemann, Markus and Barkhausen, Jörg and others: Radiation-free Thoracic Endovascular Aneurysm Repair with Fiberoptic and Electromagnetic Guidance: A Phantom Study. Journal of Vascular and Interventional Radiology, Elsevier, 2021

@article{sieren2022radiation,
  title={Radiation-free Thoracic Endovascular Aneurysm Repair with Fiberoptic and Electromagnetic Guidance: A Phantom Study},
  author={Sieren, Malte Maria and J{\"a}ckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and Matysiak, Florian and Preuss, Mark and García-Vázquez, Verónica and Stahlberg, Erik and Kleemann, Markus and Barkhausen, J{\"o}rg and others},
  journal={Journal of Vascular and Interventional Radiology},
  year={2022},
  publisher={Elsevier},
  keywords={NavEVAR}
}

Balkenhol, Maschenka CA. and Ciompi, Francesco and Świderska-Chadaj, Żaneta and van de Loo, Rob and Intezar, Milad and Otte-Höller, Irene and Geijs, Daan and Lotz, Johannes and Weiss, Nick and de Bel, Thomas and Litjens, Geert and Bult, Peter and van der Laak, Jeroen AWM.: Optimized tumour infiltrating lymphocyte assessment for triple negative breast cancer prognostics. The Breast, no. 56, pp. 78-87, Elsevier BV, apr, 2021

@article{Balkenhol_2021}, 
doi={10.1016/j.breast.2021.02.007}, 
url={https://doi.org/10.1016%2Fj.breast.2021.02.007}, 
year={2021}, 
month={apr}, 
publisher={Elsevier {BV}}, 
volume={56}, 
pages={78--87}, 
author={Balkenhol, Maschenka CA. and Ciompi, Francesco and Świderska-Chadaj, Żaneta and van de Loo, Rob and Intezar, Milad and Otte-Höller, Irene and Geijs, Daan and Lotz, Johannes and Weiss, Nick and de Bel, Thomas and Litjens, Geert and Bult, Peter and van der Laak, Jeroen AWM.}, 
title={Optimized tumour infiltrating lymphocyte assessment for triple negative breast cancer prognostics}, 
journal={The Breast}
}

Mannel, Florian: On the order of convergence of Broyden’s method. Calcolo, no. 58, pp. 1-21, 2021

@Article{Mannel4,
Author={{Mannel, Florian}},
Title={{On the order of convergence of Broyden’s method}},
FJournal={{Calcolo}},
Journal={{Calcolo}},
Volume={58},
Number={4},
Pages={1--21},
Year={2021},
Language={English},
doi={10.1007/s10092-021-00441-6},
}

Hering, Alessa and Hansen, Lasse and Mok, Tony CW and Chung, Albert and Siebert, Hanna and Häger, Stephanie and Lange, Annkristin and Kuckertz, Sven and Heldmann, Stefan and Shao, Wei and others: Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. arXiv preprint arXiv:2112.04489, 2021

@article{hering2021learn2reg,
  title={Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning},
  author={Hering, Alessa and Hansen, Lasse and Mok, Tony CW and Chung, Albert and Siebert, Hanna and H{\"a}ger, Stephanie and Lange, Annkristin and Kuckertz, Sven and Heldmann, Stefan and Shao, Wei and others},
  journal={arXiv preprint arXiv:2112.04489},
  year={2021}
}

Lellmann, J. and Modersitzki, J.: Journal of Mathematical Imaging and Vision, Special Issue on Scale Space and Variational Methods in Computer Vision. 2021

@Proceedings{Lellmann2021,
  title  = {Journal of Mathematical Imaging and Vision, Special Issue on Scale Space and Variational Methods in Computer Vision},
  year   = {2021},
  author = {Lellmann, J. and Modersitzki, J.},
}

Bednarski, Danielle and Lellmann, Jan: Inverse Scale Space Iterations for Non-convex Variational Problems Using Functional Lifting. in Scale Space and Variational Methods in Computer Vision, pp. 229-241, Springer International Publishing, Cham, 2021

@InProceedings{BednarskiLellmann2021,
author="Bednarski, Danielle and Lellmann, Jan"
editor="Elmoataz, Abderrahim and Fadili, Jalal and Qu{\'e}au, Yvain and Rabin, Julien and Simon, Lo{\"i}c"
title="Inverse Scale Space Iterations for Non-convex Variational Problems Using Functional Lifting"
booktitle="Scale Space and Variational Methods in Computer Vision"
year="2021"
publisher="Springer International Publishing"
address="Cham"
pages="229--241"
isbn="978-3-030-75549-2"
}

Jäckle, Sonja and Lange, Annkristin and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and Sieren, Malte Maria and Horn, Marco and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Heldmann, Stefan and Pätz, Torben and Preusser, Tobias: Instrument localisation for endovascular aneurysm repair: Comparison of two methods based on tracking systems or using imaging. The International Journal of Medical Robotics and Computer Assisted Surgery, no. 17, pp. e2327, 2021

@article{jaeckle2021IJMRCAS,
author = {Jäckle, Sonja and Lange, Annkristin and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and Sieren, Malte Maria and Horn, Marco and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Heldmann, Stefan and Pätz, Torben and Preusser, Tobias},
title = {Instrument localisation for endovascular aneurysm repair: Comparison of two methods based on tracking systems or using imaging},
journal = {The International Journal of Medical Robotics and Computer Assisted Surgery},
volume = {17},
number = {6},
pages = {e2327},
year = {2021},
keyword = {NavEVAR}
}

Sonja Jäckle: Guidance of medical instruments based on tracking systems. 2021

@phdthesis{jackle2021guidance,
  title={Guidance of medical instruments based on tracking systems},
  author={Sonja J{\"a}ckle},
  year={2021},
  school={Jacobs University Bremen}
}

Hering, Alessa and Lange, Annkristin and Heldmann, Stefan and Häger, Stephanie and Kuckertz, Sven: Fraunhofer MEVIS Image Registration Solutions for the Learn2Reg 2021 Challenge. in International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 147-152, 2021

@inproceedings{hering2021fraunhofer,
  title={Fraunhofer MEVIS Image Registration Solutions for the Learn2Reg 2021 Challenge},
  author={Hering, Alessa and Lange, Annkristin and Heldmann, Stefan and H{\"a}ger, Stephanie and Kuckertz, Sven},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={147--152},
  year={2021},
  organization={Springer}
}

Hering, Alessa and Häger, Stephanie and Moltz, Jan and Lessmann, Nikolas and Heldmann, Stefan and van Ginneken, Bram: CNN-based lung CT registration with multiple anatomical constraints. Medical Image Analysis, no. 72, pp. 102139, Elsevier, 2021

@article{hering2021cnn,
  title={CNN-based lung CT registration with multiple anatomical constraints},
  author={Hering, Alessa and H{\"a}ger, Stephanie and Moltz, Jan and Lessmann, Nikolas and Heldmann, Stefan and van Ginneken, Bram},
  journal={Medical Image Analysis},
  volume={72},
  pages={102139},
  year={2021},
  publisher={Elsevier}
}

Homeyer, André and Lotz, Johannes and Schwen, Lars Ole and Weiss, Nick and Romberg, Daniel and Höfener, Henning and Zerbe, Norman and Hufnagl, Peter: Artificial intelligence in pathology: From prototype to product. Journal of Pathology Informatics, no. 12, pp. 13, Elsevier BV, 2021

@article{Homeyer2021, 
doi={10.4103/jpi.jpi_84_20}, 
url={https://doi.org/10.4103%2Fjpi.jpi_84_20}, 
year={2021}, 
publisher={Elsevier {BV}}, 
volume={12}, 
number={1}, 
pages={13}, 
author={Homeyer, André and Lotz, Johannes and Schwen, Lars Ole and Weiss, Nick and Romberg, Daniel and Höfener, Henning and Zerbe, Norman and Hufnagl, Peter}, 
title={Artificial intelligence in pathology: From prototype to product}, 
journal={Journal of Pathology Informatics}
}

Diepeveen, W. and Lellmann, J.: An Inexact Semismooth Newton Method on Riemannian Manifolds with Application to Duality-Based Total Variation Denoising. SIAM Journal on Imaging Sciences, no. 14, pp. 1565-1600, 2021

@Article{Diepeveen2021,
  author  = {Diepeveen, W. and Lellmann, J.},
  title   = {An Inexact Semismooth {Newton} Method on {Riemannian} Manifolds with Application to Duality-Based Total Variation Denoising},
  journal = {{SIAM} Journal on Imaging Sciences},
  year    = {2021},
  volume  = {14},
  number  = {4},
  pages   = {1565--1600},
}

Jäckle, Sonja and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and von Haxthausen, Felix and Sieren, Malte and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Pätz, Torben: Abstract: 3D Guidance Including Shape Sensing of a Stentgraft System. in Bildverarbeitung für die Medizin 2021, pp. 34-34, Springer, 2021

@incollection{jaeckle20213BVM_3DCatheter,
  title={Abstract: 3D Guidance Including Shape Sensing of a Stentgraft System},
  author={J{\"a}ckle, Sonja and Garc\'ia-V{\'a}zquez, Ver{\'o}nica and Eixmann, Tim and Matysiak, Florian and von Haxthausen, Felix and Sieren, Malte and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and Ernst, Floris and Kleemann, Markus and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2021},
  pages={34--34},
  year={2021},
  doi={10.1007/978-3-658-33198-6_9},
  url={https://link.springer.com/chapter/10.1007%2F978-3-658-33198-6_9},
  keywords={NavEVAR},
  publisher={Springer}
}

Jäckle, Sonja and Röger, Elias and Dicken, Volker and Geisler, Benjamin and Schumacher, Jakob and Westphal, Max: A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions. International Journal of Environmental Research and Public Health, no. 18, 2021

@Article{jaeckle2021IJERPH,
AUTHOR = {Jäckle, Sonja and Röger, Elias and Dicken, Volker and Geisler, Benjamin and Schumacher, Jakob and Westphal, Max},
TITLE = {A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions},
JOURNAL = {International Journal of Environmental Research and Public Health},
VOLUME = {18},
YEAR = {2021},
NUMBER = {17},
ARTICLE-NUMBER = {9166},
URL = {https://www.mdpi.com/1660-4601/18/17/9166},
ISSN = {1660-4601},
ABSTRACT = {In Germany, local health departments are responsible for surveillance of the current pandemic situation. One of their major tasks is to monitor infected persons. For instance, the direct contacts of infectious persons at group meetings have to be traced and potentially quarantined. Such quarantine requirements may be revoked, when all contact persons obtain a negative polymerase chain reaction (PCR) test result. However, contact tracing and testing is time-consuming, costly and not always feasible. In this work, we present a statistical model for the probability that no transmission of COVID-19 occurred given an arbitrary number of negative test results among contact persons. Hereby, the time-dependent sensitivity and specificity of the PCR test are taken into account. We employ a parametric Bayesian model which combines an adaptable Beta-Binomial prior and two likelihood components in a novel fashion. This is illustrated for group events in German school classes. The first evaluation on a real-world dataset showed that our approach can support important quarantine decisions with the goal to achieve a better balance between necessary containment of the pandemic and preservation of social and economic life. Future work will focus on further refinement and evaluation of quarantine decisions based on our statistical model.},
DOI = {10.3390/ijerph18179166}
}

Sonja Jäckle and Tim Eixmann and Florian Matysiak and Malte Maria Sieren and Marco Horn and Hinnerk Schulz-Hildebrandt and Gereon Hüttmann and Torben Pätz: 3D Stent Graft Guidance based on Tracking Systems for Endovascular Aneurysm Repair. Current Directions in Biomedical Engineering, no. 7, pp. 17-20, 2021

@article{jaeckle2021CURAC,
author = {Sonja Jäckle and Tim Eixmann and Florian Matysiak and Malte Maria Sieren and Marco Horn and Hinnerk Schulz-Hildebrandt and Gereon Hüttmann and Torben Pätz},
doi = {doi:10.1515/cdbme-2021-1004},
url = {https://doi.org/10.1515/cdbme-2021-1004},
title = {3D Stent Graft Guidance based on Tracking Systems for Endovascular Aneurysm Repair},
journal = {Current Directions in Biomedical Engineering},
number = {1},
volume = {7},
year = {2021},
keywords={NavEVAR},
pages = {17--20}
}

2020

Mercan, C. and Mooij, G.C.A.M. and Tellez, D. and Lotz, J. and Weiss, N. and van Gerven, M. and Ciompi, F.: Virtual Staining for Mitosis Detection in Breast Histopathology. 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), IEEE, 2020

@inproceedings{Lotz2020ISBI,
  author={Mercan, C. and Mooij, G.C.A.M. and Tellez, D. and Lotz, J. and Weiss, N. and van Gerven, M. and Ciompi, F.},
  title={Virtual Staining for Mitosis Detection in Breast Histopathology},
  journal={2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)},
  publisher={IEEE}
  year={2020},
  url={https://doi.org/10.1109/isbi45749.2020.9098409},
}

Häger, Stephanie and Heldmann, Stefan and Hering, Alessa and Kuckertz, Sven and Lange, Annkristin: Variable fraunhofer MEVIS RegLib comprehensively applied to Learn2Reg challenge. in International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 74-79, 2020

@inproceedings{hager2020variable,
  title={Variable fraunhofer MEVIS RegLib comprehensively applied to Learn2Reg challenge},
  author={H{\"a}ger, Stephanie and Heldmann, Stefan and Hering, Alessa and Kuckertz, Sven and Lange, Annkristin},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={74--79},
  year={2020},
  organization={Springer}
}

Jäckle Sonja and García-Vázquez Verónica and Eixmann Tim and Matysiak Florian and von Haxthausen Felix and Sieren Malte Maria and Schulz-Hildebrandt Hinnerk and Hüttmann Gereon and Ernst Floris and Kleemann Markus and Paetz Torben: Three-dimensional guidance including shape sensing of a stentgraft system for endovascular aneurysm repair. International Journal of Computer Assisted Radiology and Surgery, 2020

@article{jaeckle2020IJCARS,
author = {Jäckle, Sonja and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and von Haxthausen, Felix, and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Paetz, Torben },
title = {{Three-dimensional guidance including shape sensing of a stentgraft system for endovascular aneurysm repair}},
journal={International Journal of Computer Assisted Radiology and Surgery},
year={2020},
keywords = {NavEVAR},
url={https://doi.org/10.1007/s11548-020-02167-2},
}

Sieren, MM and Brenne, F and Hering, A and Kienapfel, H and Gebauer, N and Oechtering, TH and Fürschke, A and Wegner, F and Stahlberg, E and Heldmann, S and others: Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software. European Radiology, no. 30, pp. 3198-3209, Springer, 2020

@article{sieren2020rapid,
  title={Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software},
  author={Sieren, MM and Brenne, F and Hering, A and Kienapfel, H and Gebauer, N and Oechtering, TH and F{\"u}rschke, A and Wegner, F and Stahlberg, E and Heldmann, S and others},
  journal={European Radiology},
  volume={30},
  number={6},
  pages={3198--3209},
  year={2020},
  publisher={Springer}
}

Lange, Annkristin and Heldmann, Stefan: Multilevel 2D-3D Intensity-Based Image Registration. in International Workshop on Biomedical Image Registration, pp. 57-66, 2020

@inproceedings{lange2020multilevel,
  title={Multilevel 2D-3D Intensity-Based Image Registration},
  author={Lange, Annkristin and Heldmann, Stefan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={57--66},
  year={2020},
  organization={Springer},
  keywords={NavEVAR},
  url={https://doi.org/10.1007/978-3-030-50120-4_6}
}

Thomas Vogt: Measure-Valued Variational Models with Applications in Image Processing. 2020

@phdthesis{2020-PhD-Vogt,
  Author = {Thomas Vogt},
  Title = {Measure-Valued Variational Models with Applications in Image Processing},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2020},
}

Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan: Learning Deformable Image Registration with Structure Guidance Constraints for Adaptive Radiotherapy. in International Workshop on Biomedical Image Registration, pp. 44-53, 2020

@inproceedings{kuckertz2020WBIR,
  title={Learning Deformable Image Registration with Structure Guidance Constraints for Adaptive Radiotherapy},
  author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={44--53},
  year={2020},
  organization={Springer},
  url={http://dx.doi.org/10.1007%2F978-3-030-50120-4_5}
}

Lange, Annkristin and Heldmann, Stefan: Intensity-Based 2D-3D Registration Using Normalized Gradient Fields. in Bildverarbeitung für die Medizin 2020, pp. 163-168, Springer, 2020

@incollection{lange2020intensity,
  title={Intensity-Based 2D-3D Registration Using Normalized Gradient Fields},
  author={Lange, Annkristin and Heldmann, Stefan},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={163--168},
  year={2020},
  keywords={NavEVAR},
  url={https://doi.org/10.1007/978-3-658-29267-6_33},
  publisher={Springer}
}

Parisotto, S. and Lellmann, J. and Masnou, S. and Schönlieb, C.: Higher-Order Total Directional Variation: Imaging Applications. SIAM Journal on Imaging Sciences, no. 13, pp. 2063-2104, 2020

@Article{ParisottoLellmannMasnouSchoenlieb2020,
  author  = {Parisotto, S. and Lellmann, J. and Masnou, S. and Sch{\"o}nlieb, C.},
  title   = {Higher-Order Total Directional Variation: Imaging Applications},
  journal = {{SIAM} Journal on Imaging Sciences},
  year    = {2020},
  volume  = {13},
  number  = {4},
  pages   = {2063--2104},
}

Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan: Deep learning based CT-CBCT image registration for adaptive radio therapy. in Medical Imaging 2020: Image Processing, no. 11313, pp. 113130Q, 2020

@inproceedings{kuckertz2020SPIE,
  title={Deep learning based CT-CBCT image registration for adaptive radio therapy},
  author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
  booktitle={Medical Imaging 2020: Image Processing},
  volume={11313},
  pages={113130Q},
  year={2020},
  organization={International Society for Optics and Photonics},
  url={http://dx.doi.org/10.1117%2F12.2549531}
}

Johannes Lotz: Combined Local and Global Image Registration and its Application to Large-Scale Images in Digital Pathology. 2020

@phdthesis{2020-PhD-Lotz,
  Author = {Johannes Lotz},
  Title = {Combined Local and Global Image Registration and its Application to Large-Scale Images in Digital Pathology},
  School = {Institute of Mathematics and Image Computing, University of Lübeck},
  Year = {2020},
}

García-Vázquez, Verónica and Matysiak, Florian and Jäckle, Sonja and Eixmann, Tim and Sieren, Malte Maria and von Haxthausen, Felix and Ernst, Floris: Catheter pose-dependent virtual angioscopy images for endovascular aortic repair: validation with a video graphics array (VGA) camera. Current Directions in Biomedical Engineering, no. 6, De Gruyter, 2020

@article{garcia2020catheter,
  title={Catheter pose-dependent virtual angioscopy images for endovascular aortic repair: validation with a video graphics array (VGA) camera},
  author={García-Vázquez, Verónica and Matysiak, Florian and Jäckle, Sonja and Eixmann, Tim and Sieren, Malte Maria and von Haxthausen, Felix and Ernst, Floris},
  journal={Current Directions in Biomedical Engineering},
  volume={6},
  number={1},
  year={2020},
  keywords={NavEVAR},
  publisher={De Gruyter}
}

Lassen-Schmidt, Bianca and Hering, Alessa and Krass, Stefan and Meine, Hans: Automatic segmentation of the pulmonary lobes with a 3D u-net and optimized loss function. arXiv preprint arXiv:2006.00083, 2020

@article{lassen2020automatic,
  title={Automatic segmentation of the pulmonary lobes with a 3D u-net and optimized loss function},
  author={Lassen-Schmidt, Bianca and Hering, Alessa and Krass, Stefan and Meine, Hans},
  journal={arXiv preprint arXiv:2006.00083},
  year={2020}
}

Borovec, Jiří and Kybic, Jan and Arganda-Carreras, Ignacio and Sorokin, Dmitry V. and Bueno, Gloria and Khvostikov, Alexander V. and Bakas, Spyridon and Chang, Eric I-Chao and Heldmann, Stefan and Kartasalo, Kimmo and Latonen, Leena and Lotz, Johannes and Noga, Michelle and Pati, Sarthak and Punithakumar, Kumaradevan and Ruusuvuori, Pekka and Skalski, Andrzej and Tahmasebi, Nazanin and Valkonen, Masi and Venet, Ludovic and Wang, Yizhe and Weiss, Nick and Wodzinski, Marek and Xiang, Yu and Xu, Yan and Yan, Yan and Yushkevic, Paul and Zhao, Shengyu and Muñoz-Barrutia, Arrate: ANHIR: Automatic Non-rigid Histological Image Registration Challenge. IEEE Transactions on Medical Imaging, IEEE, 2020

@article{Lotz2020ANHIR,
  author={Borovec, Jiří and Kybic, Jan and Arganda-Carreras, Ignacio and Sorokin, Dmitry V. and Bueno, Gloria and Khvostikov, Alexander V. and Bakas, Spyridon and Chang, Eric I-Chao and Heldmann, Stefan and Kartasalo, Kimmo and Latonen, Leena and Lotz, Johannes and Noga, Michelle and Pati, Sarthak and Punithakumar, Kumaradevan and
Ruusuvuori, Pekka and Skalski, Andrzej and Tahmasebi, Nazanin and Valkonen, Masi and Venet, Ludovic and Wang, Yizhe and Weiss, Nick and Wodzinski, Marek and Xiang, Yu and Xu, Yan and Yan, Yan and Yushkevic, Paul and Zhao, Shengyu and Muñoz-Barrutia, Arrate},
  title={ANHIR: Automatic Non-rigid Histological Image Registration Challenge},
  journal={IEEE Transactions on Medical Imaging},
  publisher={IEEE}
  year={2020},
  url={https://doi.org/10.1109/tmi.2020.2986331},
}

Aggrawal, Hari Om and Andersen, Martin S. and Modersitzki, Jan: An Image Registration Framework for Discontinuous Mappings Along Cracks. in International Workshop on Biomedical Image Registration, pp. 163-173, Springer, 2020

@inproceedings{Aggrawal2020WBIR,
author={Aggrawal, Hari Om and Andersen, Martin S. and Modersitzki, Jan},
title={An Image Registration Framework for Discontinuous Mappings Along Cracks},
booktitle={International Workshop on Biomedical Image Registration},
year={2020},
publisher={Springer},
pages={163--173},
url={{{https://doi.org/10.1007/978-3-030-50120-4_16}}},
doi={{{10.1007/978-3-030-50120-4_16}}}
}

Aggrawal, Hari Om and Modersitzki, Jan: Accelerating the Registration of Image Sequences by Spatio-Temporal Multilevel Strategies. in Proceedings - International Symposium on Biomedical Imaging, pp. 683-686, IEEE Computer Society, 2020

@inproceedings{Aggrawal2020ISBI,
author={Aggrawal, Hari Om and Modersitzki, Jan},
title={Accelerating the Registration of Image Sequences by Spatio-Temporal Multilevel Strategies},
booktitle={Proceedings - International Symposium on Biomedical Imaging},
year={2020},
publisher={IEEE Computer Society},
pages={683--686},
url={{{https://doi.org/10.1109/ISBI45749.2020.9098520}}},
doi={{{10.1109/ISBI45749.2020.9098520}}}
}

Jäckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Pätz, Torben: Abstract: Fiber Optical Shape Sensing of Flexible Instruments. in Bildverarbeitung für die Medizin 2020, pp. 314-314, Springer, 2020

@incollection{jaeckle2020BVM_FOSS,
  title={Abstract: Fiber Optical Shape Sensing of Flexible Instruments},
  author={J{\"a}ckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={314--314},
  year={2020},
  keywords={NavEVAR},
  url={https://link.springer.com/chapter/10.1007/978-3-658-29267-6_70},
  doi={10.1007/978-3-658-29267-6_70},
  publisher={Springer}
}

Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan: Abstract: Deep Learning Based CT-CBCT Image Registration for Adaptive Radio Therapy. in Bildverarbeitung für die Medizin 2020, pp. 229-229, Springer, 2020

@InProceedings{kuckertz2020BVM,
author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
editor={Tolxdorff, Thomas and Deserno, Thomas M. and Handels, Heinz and Maier, Andreas and Maier-Hein, Klaus H. and Palm, Christoph},
title={Abstract: Deep Learning Based CT-CBCT Image Registration for Adaptive Radio Therapy},
booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
year={2020},
publisher={Springer},
pages={229--229},
isbn={978-3-658-29267-6},
url={https://doi.org/10.1007/978-3-658-29267-6_51}
}

Jäckle, Sonja and García-Vázquez, Verónica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Pätz, Torben: Abstract: 3D Catheter Guidance Including Shape Sensing for Endovascular Navigation. in Bildverarbeitung für die Medizin 2020, pp. 261-261, Springer, 2020

@incollection{jaeckle20203BVM_3DCatheter,
  title={Abstract: 3D Catheter Guidance Including Shape Sensing for Endovascular Navigation},
  author={J{\"a}ckle, Sonja and Garc\'ia-V{\'a}zquez, Ver{\'o}nica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and Ernst, Floris and Kleemann, Markus and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={261--261},
  year={2020},
  doi={10.1007/978-3-658-29267-6_58},
  url={https://link.springer.com/chapter/10.1007/978-3-658-29267-6_58},
  keywords={NavEVAR},
  publisher={Springer}
}

Corona, V. and Lellmann, J. and Nestor, P. and Schönlieb, C.-B. and Acosta-Cabronero, J.: A multi-contrast MRI approach to thalamus segmentation. Human Brain Mapping, 2020

@Article{CoronaLellmannNestorEtAl2020,
  author =  {Corona, V. and Lellmann, J. and Nestor, P. and Sch\"onlieb, C.-B. and Acosta-Cabronero, J.},
  title =   {A multi-contrast MRI approach to thalamus segmentation},
  journal = {Human Brain Mapping},
  year =    {2020}
}

Polzin, Thomas and Niethammer, Marc and Vialard, François-Xavier and Modersitzki, Jan: A discretize–optimize approach for LDDMM registration. in Riemannian Geometric Statistics in Medical Image Analysis, pp. 479 - 532, Academic Press, 2020

@incollection{PolzinEtAl2020DiscretizeOptimize,
title = {A discretize–optimize approach for LDDMM registration},
editor = {Xavier Pennec and Stefan Sommer and Tom Fletcher},
booktitle = {Riemannian Geometric Statistics in Medical Image Analysis},
publisher = {Academic Press},
pages = {479 - 532},
year = {2020},
isbn = {978-0-12-814725-2},
doi = {https://doi.org/10.1016/B978-0-12-814725-2.00022-4},
url = {http://www.sciencedirect.com/science/article/pii/B9780128147252000224},
author = {Polzin, Thomas and Niethammer, Marc and Vialard, François-Xavier and Modersitzki, Jan},
keywords = {LDDMM, Discretize–Optimize, Image Registration, Optimal Control, Lung, Computed Tomography, Runge–Kutta Methods},
abstract = {Large deformation diffeomorphic metric mapping (LDDMM) is a popular approach for deformable image registration with nice mathematical properties. LDDMM encodes spatial deformations through time-varying velocity fields. Hence registration requires optimization over these time-varying velocity fields, resulting in a large-scale constrained optimization problem. Typical numerical solution approaches for LDDMM use an optimize–discretize strategy, where optimality conditions are derived in the continuum and subsequently discretized and solved. Here we explore solution methods based on the discretize–optimize approach and discuss ramifications for popular LDDMM relaxation and shooting approaches. The focus is on a consistent method that uses the appropriate Runge–Kutta methods for the solution of all arising PDEs in the Eulerian frame. Additionally, we discuss both run-time and memory consumption requirements and present an approach that makes the registration suitable for standard PCs. We demonstrate the practicality of our proposed approach in the context of image registration applied to 3D computed tomography (CT) scans of the lung.}
}

Jäckle, Sonja and García-Vázquez, Verónica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Paetz, Torben: 3D catheter guidance including shape sensing for endovascular navigation. in Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling, no. 11315, pp. 21 - 29, SPIE, 2020

@inproceedings{jaeckle2020SPIE,
author = {Jäckle, Sonja and García-Vázquez, Verónica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Paetz, Torben },
title = {{3D catheter guidance including shape sensing for endovascular navigation}},
volume = {11315},
booktitle = {Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling},
editor = {Baowei Fei and Cristian A. Linte},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {21 -- 29},
keywords = {catheter guidance, electromagnetic tracking, fiber Bragg gratings, shape sensing, endovascular navigation, endovascular aneurysm repair, NavEVAR},
year = {2020},
doi = {10.1117/12.2548094},
URL = {https://doi.org/10.1117/12.2548094}
}

2019

Brehmer, Kai and Aggrawal, Hari Om and Heldmann, Stefan and Modersitzki, Jan: Variational registration of multiple images with the SVD based SqN distance measure. in Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings, pp. 251-262, Springer International Publishing, 2019

@inproceedings{Brehmer2019,
author={Brehmer, Kai and Aggrawal, Hari Om and Heldmann, Stefan and Modersitzki, Jan},
title={Variational registration of multiple images with the SVD based SqN distance measure},
booktitle={Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings},
year={2019},
editor={Burger, Martin and Lellmann, Jan and Modersitzki, Jan},
publisher={Springer International Publishing},
pages={251--262},
url={{{https://arxiv.org/abs/1907.09732}}},
doi={{{10.1007/978-3-030-22368-7_20}}}
}

Alessa Hering and Stefan Heldmann: Unsupervised learning for large motion thoracic CT follow-up registration. in Medical Imaging 2019: Image Processing, no. 10949, pp. 1-7, SPIE, 2019

@inproceedings{hering2019SPIE,
author = {Hering, Alessa and Heldmann, Stefan},
title = {{Unsupervised learning for large motion thoracic CT follow-up registration}},
volume = {10949},
booktitle = {Medical Imaging 2019: Image Processing},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {1-7},
year = {2019},
doi = {10.1117/12.2506962},
URL = {https://doi.org/10.1117/12.2506962}
}

Hering, Alessa and Heldmann, Stefan: Unsupervised learning for large motion thoracic CT follow-up registration. in Medical Imaging 2019: Image Processing, no. 10949, pp. 331-337, 2019

@inproceedings{hering2019unsupervised,
  title={Unsupervised learning for large motion thoracic CT follow-up registration},
  author={Hering, Alessa and Heldmann, Stefan},
  booktitle={Medical Imaging 2019: Image Processing},
  volume={10949},
  pages={331--337},
  year={2019},
  organization={SPIE}
}

Wacker, Benjamin: Two variants of magnetic diffusivity stabilized finite element methods for the magnetic induction equation. Mathematical Methods in the Applied Sciences, ley Online Library, 2019

@article{Wacker2019,
  title={Two variants of magnetic diffusivity stabilized finite element methods for the magnetic induction equation},
  author={Wacker, Benjamin},
  journal={Mathematical Methods in the Applied Sciences},
  year={2019},
  publisher={Wiley Online Library}
}

Jäckle, Sonja and Strehlow, Jan and Heldmann, Stefan: Shape Sensing with Fiber Bragg Grating Sensors. in Bildverarbeitung für die Medizin 2019, pp. 258-263, Springer, 2019

@incollection{jaeckle2019shape,
  title={Shape Sensing with Fiber Bragg Grating Sensors},
  author={J{\"a}ckle, Sonja and Strehlow, Jan and Heldmann, Stefan},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2019},
  pages={258--263},
  year={2019},
  publisher={Springer},
  keywords = {NavEVAR},
  url={https://link.springer.com/chapter/10.1007%2F978-3-658-25326-4_58},
}

Lellmann, J. and Burger, M. and Modersitzki, J. (eds.): Proceedings of the 7th International Conference On Scale Space and Variational Methods in Computer Vision (SSVM 2019). Springer, 2019

@Book{LellmannBurgerModersitzki2019,
  title =     {Proceedings of the 7th International Conference On Scale Space and Variational Methods in Computer Vision (SSVM 2019)},
  publisher = {Springer},
  year =      {2019},
  author = {Lellmann, J. and Burger, M. and Modersitzki, J. (eds.)},
  series =    {Lecture Notes in Computer Science}
}

Hering, Alessa and van Ginneken, Bram and Heldmann, Stefan: mlVIRNET: Multilevel Variational Image Registration Network. in Proceeding of Medical Image Computing and Computer Assisted Intervention (MICCAI 2019), no. 11769, pp. 257-265, Springer, 2019

@inproceedings{hering2019MICCAI,
author = {Hering, Alessa and van Ginneken, Bram and Heldmann, Stefan},
title = {{mlVIRNET: Multilevel Variational Image Registration Network}},
volume = {11769},
booktitle = {Proceeding of Medical Image Computing and Computer Assisted Intervention (MICCAI 2019)},
publisher = {Springer},
pages = {257-265},
year = {2019},
doi = {10.1007/978-3-030-32226-7_29},
URL = {https://doi.org/10.1007/978-3-030-32226-7_29}
}

Hering, Alessa and Ginneken, Bram van and Heldmann, Stefan: mlvirnet: Multilevel variational image registration network. in International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 257-265, 2019

@inproceedings{hering2019mlvirnet,
  title={mlvirnet: Multilevel variational image registration network},
  author={Hering, Alessa and Ginneken, Bram van and Heldmann, Stefan},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={257--265},
  year={2019},
  organization={Springer}
}

Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P: Memory-efficient 2.5 D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans. International journal of computer assisted radiology and surgery, no. 14, pp. 1901-1912, Springer, 2019

@article{hering2019IJCARS,
  title={Memory-efficient 2.5 D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans},
  author={Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P},
  journal={International journal of computer assisted radiology and surgery},
  volume={14},
  number={11},
  pages={1901--1912},
  year={2019},
  publisher={Springer},
  url={https://doi.org/10.1007/s11548-019-02068-z}
}

@article{hering2019memory,
  title={Memory-efficient 2.5 D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans},
  author={Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P},
  journal={International journal of computer assisted radiology and surgery},
  volume={14},
  number={11},
  pages={1901--1912},
  year={2019},
  publisher={Springer}
}

Klein, Oliver and Kanter, Frederic and Kulbe, Hagen and Jank, Paul and Denkert, Carsten and Nebrich, Grit and Schmitt, Wolfgang D. and Wu, Zhiyang and Kunze, Catarina A. and Sehouli, Jalid and Darb-Esfahani, Silvia and Braicu, Ioana and Lellmann, Jan and Thiele, Herbert and Taube, Eliane T.: MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods. PROTEOMICS – Clinical Applications, no. 13, pp. 1700181, 2019

@article{OliverEtAl2019,
author = {Klein, Oliver and Kanter, Frederic and Kulbe, Hagen and Jank, Paul and Denkert, Carsten and Nebrich, Grit and Schmitt, Wolfgang D. and Wu, Zhiyang and Kunze, Catarina A. and Sehouli, Jalid and Darb-Esfahani, Silvia and Braicu, Ioana and Lellmann, Jan and Thiele, Herbert and Taube, Eliane T.},
title = {MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods},
journal = {PROTEOMICS – Clinical Applications},
volume = {13},
number = {1},
pages = {1700181},
doi = {10.1002/prca.201700181},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201700181},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/prca.201700181},
abstract = {Purpose Precise histological classification of epithelial ovarian cancer (EOC) has immanent diagnostic and therapeutic consequences, but remains challenging in histological routine. The aim of this pilot study is to examine the potential of matrix-assisted laser desorption/ionization (MALDI) imaging mass spectrometry in combination with machine learning methods to classify EOC histological subtypes from tissue microarray. Experimental design Formalin-fixed-paraffin-embedded tissue of 20 patients with ovarian clear-cell, 14 low-grade serous, 19 high-grade serous ovarian carcinomas, and 14 serous borderline tumors are analyzed using MALDI-Imaging. Classifications are computed by linear discriminant analysis (LDA), support vector machines with linear (SVM-lin) and radial basis function kernels (SVM-rbf), a neural network (NN), and a convolutional neural network (CNN). Results MALDI-Imaging and machine learning methods result in classification of EOC histotypes with mean accuracy of 80\% for LDA, 80\% SVM-lin, 74\% SVM-rbf, 83\% NN, and 85\% CNN. Based on sensitivity (69–100\%) and specificity (90–99\%), CCN and NN are most suited to EOC classification. Conclusion and clinical relevance The pilot study demonstrates the potential of MALDI-Imaging derived proteomic classifiers in combination with machine learning algorithms to discriminate EOC histotypes. Applications may support the development of new prognostic parameters in the assessment of EOC.},
year = {2019}
}

Klein, O. and Kanter, F. and Kulbe, H. and Jank, P. and Denkert, C. and Nebrich, G. and Schmitt, W.D. and Wu, Z. and Kunze, C.A. and Sehouli, J. and Darb-Eshfahani, S. and Braicu, I. and Lellmann, J. and Thiele, H. and Taube, E.T.: MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods. Proteomics Clinical Applications, no. 13, pp. 1700181, 2019

@Article{Klein2018,
  author =  {Klein, O. and Kanter, F. and Kulbe, H. and Jank, P. and Denkert, C. and Nebrich, G. and Schmitt, W.D. and Wu, Z. and Kunze, C.A. and Sehouli, J. and Darb-Eshfahani, S. and Braicu, I. and Lellmann, J. and Thiele, H. and Taube, E.T.},
  title =   {{MALDI}-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods},
  journal = {Proteomics Clinical Applications},
  year =    {2019},
  volume =  {13},
  number =  {1},
  pages =   {1700181}
}

Vogt, Thomas and Strekalovskiy, Evgeny and Cremers, Daniel and Lellmann, Jan: Lifting methods for manifold-valued variational problems. in Variational Methods for Nonlinear Geometric Data and Applications, pp. In press, Springer International Publishing, 2019

@incollection{VogtEtAl2019,
author={Vogt, Thomas and Strekalovskiy, Evgeny and Cremers, Daniel and Lellmann, Jan},
title={Lifting methods for manifold-valued variational problems},
series={Springer Handbooks},
booktitle={Variational Methods for Nonlinear Geometric Data and Applications},
editor={Grohs, Philipp and Holler, Martin and Weinmann, Andreas},
publisher={Springer International Publishing},
pages={In press},
year={2019},
url={{{https://arxiv.org/pdf/1908.03776.pdf}}},
doi={{{10.1007/tba}}}
}

Chen, Ke and Lui, Lok Ming and Modersitzki, Jan: Image and surface registration. in Handbook of Numerical Analysis, no. 20, pp. 579-611, Elsevier, 2019

@chapter{chen2019,
author = {Chen, Ke and Lui, Lok Ming and Modersitzki, Jan},
title = {{Image and surface registration}},
volume = {20},
booktitle = {Handbook of Numerical Analysis},
publisher = {Elsevier},
pages = {579-611},
year = {2019},
doi = {10.1016/bs.hna.2019.07.001},
URL = {https://doi.org/10.1016/bs.hna.2019.07.001}
}

Vogt, Thomas and Lellmann, Jan: Functional Liftings of Vectorial Variational Problems with Laplacian Regularization. in Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings, pp. 559-571, Springer International Publishing, 2019

@inproceedings{VogtLellmann2019,
author={Vogt, Thomas and Lellmann, Jan},
title={Functional Liftings of Vectorial Variational Problems with Laplacian Regularization},
booktitle={Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings},
year={2019},
editor={Burger, Martin and Lellmann, Jan and Modersitzki, Jan},
publisher={Springer International Publishing},
pages={559--571},
url={{{https://arxiv.org/pdf/1904.00898.pdf}}},
doi={{{10.1007/978-3-030-22368-7_44}}}
}

Budelmann, Daniel and König, Lars and Papenberg, Nils and Lellmann, Jan: Fully-Deformable 3D Image Registration in Two Seconds. in Bildverarbeitung für die Medizin 2019, pp. 302-307, Springer Fachmedien Wiesbaden, Wiesbaden, 2019

@InProceedings{BudelmannPapenbergLellmann2018,
  author =    {Budelmann, Daniel and K{\"o}nig, Lars and Papenberg, Nils and Lellmann, Jan},
  title =     {Fully-Deformable 3D Image Registration in Two Seconds},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin 2019},
  year =      {2019},
  editor =    {Handels, Heinz and Deserno, Thomas M. and Maier, Andreas and Maier-Hein, Klaus Hermann and Palm, Christoph and Tolxdorff, Thomas},
  pages =     {302--307},
  address =   {Wiesbaden},
  publisher = {Springer Fachmedien Wiesbaden}
}

Jäckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Pätz, Torben: Fiber optical shape sensing of flexible instruments for endovascular navigation. International Journal of Computer Assisted Radiology and Surgery, 2019

@article{jaeckle2019FOSS,
  author={J{\"a}ckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and P{\"a}tz, Torben},
  title={Fiber optical shape sensing of flexible instruments for endovascular navigation},
  journal={International Journal of Computer Assisted Radiology and Surgery},
  year={2019},
  volume={14},
  number={12},
  pages={2137--2145},
  keywords = {NavEVAR},
  url={https://doi.org/10.1007/s11548-019-02059-0},
}

Bulten, Wouter and Bándi, Péter and Hoven, Jeffrey and van de Loo, Rob and Lotz, Johannes and Weiss, Nick and van der Laak, Jeroen and van Ginneken, Bram and Hulsbergen-van de Kaa, Christina and Litjens, Geert: Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard. Scientific Reports, no. 9, 2019

@article{Lotz2019,
  author={Bulten, Wouter and Bándi, Péter and Hoven, Jeffrey and van de Loo, Rob and Lotz, Johannes and Weiss, Nick and van der Laak, Jeroen and van Ginneken, Bram and Hulsbergen-van de Kaa, Christina and Litjens, Geert },
  title={Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard},
  journal={Scientific Reports},
  year={2019},
  volume={9},
  article={864},
  url={https://doi.org/10.1038/s41598-018-37257-4},
}

Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P: Enhancing label-driven deep deformable image registration with local distance metrics for state-of-the-art cardiac motion tracking. in Bildverarbeitung für die Medizin 2019, pp. 309-314, Springer, 2019

@incollection{hering2019BVM,
  title={Enhancing label-driven deep deformable image registration with local distance metrics for state-of-the-art cardiac motion tracking},
  author={Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2019},
  pages={309--314},
  year={2019},
  publisher={Springer},
  url={http://dx.doi.org/10.1007%2F978-3-658-25326-4_69},
}

Hans Meine and Alessa Hering: Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor. in Proceedings of Medical Imaging with Deep Learning (MIDL 2019), no. 102, pp. 1-4, 2019

@inproceedings{hering2019MIDL,
author = {Meine, Hans and Hering, Alessa},
title = {{Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor}},
volume = {102},
booktitle = {Proceedings of Medical Imaging with Deep Learning (MIDL 2019)},
pages = {1-4},
year = {2019},
}

Meine, Hans and Hering, Alessa: Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor. arXiv preprint arXiv:1909.08898, 2019

@article{meine2019efficient,
  title={Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor},
  author={Meine, Hans and Hering, Alessa},
  journal={arXiv preprint arXiv:1909.08898},
  year={2019}
}

von Haxthausen, Felix and Jäckle, Sonja and Strehlow, Jan and Ernst, Floris and García-Vázquez, Verónica: Catheter pose-dependent virtual angioscopy images visualized on augmented reality glasses. Current Directions in Biomedical Engineering, no. 5, pp. 289-291, 2019

@INPROCEEDINGS{vonHaxthausen2019,
    author = {von Haxthausen, Felix and J{\"{a}}ckle, Sonja and Strehlow, Jan and Ernst, Floris and  Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica},
     title = {Catheter pose-dependent virtual angioscopy images visualized on augmented reality glasses},
   journal = {Current Directions in Biomedical Engineering},
    volume = {5},
    number = {1},
      year = {2019},
     keywords = {NavEVAR},
     pages = {289-291},
     url={https://www.degruyter.com/view/j/cdbme.2019.5.issue-1/cdbme-2019-0073/cdbme-2019-0073.xml}
}

Kraft, Valentin and Strehlow, Jan and Jäckle, Sonja and García-Vázquez, Verónica and Link, Florian and von Haxthausen, Felix and Schenk, Andrea and Schumann, Christian: A comparison of streaming methods for the Microsoft HoloLens. in Tagungsgband der 18. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC), pp. 212-216, Oliver Burgert, Hochschule Reutlingen, Bernhard Hirt, Universität Tübingen, p,, 2019

@INPROCEEDINGS{kraft2019,
     author = {Kraft, Valentin and Strehlow, Jan and J{\"{a}}ckle, Sonja and Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica and Link, Florian and von Haxthausen, Felix and Schenk, Andrea and Schumann, Christian},
      month = sep,
      title = {A comparison of streaming methods for the Microsoft HoloLens},
  booktitle = {Tagungsgband der 18. Jahrestagung der Deutschen Gesellschaft f{\"u}r Computer- und Roboterassistierte Chirurgie (CURAC)},
       year = {2019},
      pages = {212-216},
  publisher = {Oliver Burgert, Hochschule Reutlingen, Bernhard Hirt, Universit{\"a}t T{\"u}bingen},
   location = {Reutlingen (Germany)},
       isbn = {978-3-00-063717-9}
}

2018

Brehmer, Kai and Wacker, Benjamin and Modersitzki, Jan: Simultaneous Registration of Image Sequences-a novel singular value based images similarity measure. PAMM, no. 18, pp. e201800370, Wiley Online Library, 2018

@article{brehmer2018simultaneous,
  title={Simultaneous Registration of Image Sequences--a novel singular value based images similarity measure},
  author={Brehmer, Kai and Wacker, Benjamin and Modersitzki, Jan},
  journal={PAMM},
  volume={18},
  number={1},
  pages={e201800370},
  year={2018},
  publisher={Wiley Online Library},
  url={{{https://arxiv.org/abs/1907.09275}}},
  doi={{{10.1002/pamm.201800370}}}
}

Jäckle, Sonja and Heldmann, Stefan: Rigid Lens-Locally Rigid Approximations of Deformable Registration for Change Assessment in Thorax-Abdomen CT Follow-Up Scans. in Image Analysis for Moving Organ, Breast, and Thoracic Images, pp. 272-283, Springer, 2018

@incollection{jaeckle2018rigid,
  title={Rigid Lens--Locally Rigid Approximations of Deformable Registration for Change Assessment in Thorax-Abdomen CT Follow-Up Scans},
  author={J{\"a}ckle, Sonja and Heldmann, Stefan},
  booktitle={Image Analysis for Moving Organ, Breast, and Thoracic Images},
  pages={272--283},
  year={2018},
  publisher={Springer},
  url={https://link.springer.com/chapter/10.1007/978-3-030-00946-5_27},
}

García-Vázquez, Verónica and von Haxthausen, Felix and Jäckle, Sonja and Schumann, Christian and Kuhlemann, Ivo and Bouchagiar, Juljan and Höfer, Anna-Catharina and Matysiak, Florian and Hüttmann, Gereon and Goltz, Jan Peter and others: Navigation and visualisation with HoloLens in endovascular aortic repair. Innovative Surgical Sciences, no. 3, pp. 167-177, De Gruyter, 2018

@article{garcia2018navigation,
  title={Navigation and visualisation with HoloLens in endovascular aortic repair},
  author={Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica and von Haxthausen, Felix and J{\"a}ckle, Sonja and Schumann, Christian and Kuhlemann, Ivo and Bouchagiar, Juljan and H{\"o}fer, Anna-Catharina and Matysiak, Florian and H{\"u}ttmann, Gereon and Goltz, Jan Peter and others},
  journal={Innovative Surgical Sciences},
  volume={3},
  number={3},
  pages={167--177},
  year={2018},
  publisher={De Gruyter},
  keywords={NavEVAR},
  url={https://degruyter.com/downloadpdf/j/iss.2018.3.issue-3/iss-2018-2001/iss-2018-2001.pdf}
}

Vogt, T. and Lellmann, J.: Measure-Valued Variational Models with Applications to Diffusion-Weighted Imaging,. Journal of Mathematical Imaging and Vision,, Springer International Publishing, Jun,, 2018

@article{VogtLellmann2018,
author ={Vogt, T. and Lellmann, J.},
publisher={Springer International Publishing},
title={Measure-Valued Variational Models with Applications to Diffusion-Weighted Imaging},
journal={Journal of Mathematical Imaging and Vision},
year={2018},
month={Jun},
day={08},
issn={1573-7683},
doi={10.1007/s10851-018-0827-8},
url={https://arxiv.org/pdf/1710.00798.pdf}
}

Lars König: Matrix-free approaches for deformable image registration with large-scale and real-time applications in medical imaging. 2018

@phdthesis{2018-PhD-Konig,
  Author = {Lars König},
  Title = {Matrix-free approaches for deformable image registration with large-scale and real-time applications in medical imaging},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2018},
}

Thomas Polzin: Large Deformation Diffeomorphic Metric Mappings - Theory, Numerics, and Applications. 2018

@phdthesis{2018-PhD-Polzin,
  Author = {Thomas Polzin},
  Title = {Large Deformation Diffeomorphic Metric Mappings -- Theory, Numerics, and Applications},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2018},
}

Loewenhauser, Benedikt and Lellmann, Jan: Functional Lifting for Variational Problems with Higher-Order. Imaging, Vision and Learning Based on Optimization and PDEs: IVLOPDE, Bergen, Norway, August 29-September 2, 2016, pp. 101, ringer, 2018

@article{loewenhauser2018functional,
  title={Functional Lifting for Variational Problems with Higher-Order},
  author={Loewenhauser, Benedikt and Lellmann, Jan},
  journal={Imaging, Vision and Learning Based on Optimization and PDEs: IVLOPDE, Bergen, Norway, August 29--September 2, 2016},
  pages={101},
  year={2018},
  publisher={Springer},
  URL={https://link.springer.com/chapter/10.1007%2F978-3-319-91274-5_5}
}

Hanson, Erik A and Sandmann, Constantin and Malyshev, Alexander and Lundervold, Arvid and Modersitzki, Jan and Hodneland, Erlend: Estimating the discretization dependent accuracy of perfusion in coupled capillary flow measurements. PloS one, no. 13, pp. e0200521, blic Library of Science, 2018

@article{hanson2018estimating,
  title={Estimating the discretization dependent accuracy of perfusion in coupled capillary flow measurements},
  author={Hanson, Erik A and Sandmann, Constantin and Malyshev, Alexander and Lundervold, Arvid and Modersitzki, Jan and Hodneland, Erlend},
  journal={PloS one},
  volume={13},
  number={7},
  pages={e0200521},
  year={2018},
  publisher={Public Library of Science}
}

Mader, Alexander Oliver and Lorenz, Cristian and Bergtholdt, Martin and von Berg, Jens and Schramm, Hauke and Modersitzki, Jan and Meyer, Carsten: Detection and localization of spatially correlated point landmarks in medical images using an automatically learned conditional random field. Computer Vision and Image Understanding, no. 176, pp. 45-53, sevier, 2018

@article{mader2018detection,
  title={Detection and localization of spatially correlated point landmarks in medical images using an automatically learned conditional random field},
  author={Mader, Alexander Oliver and Lorenz, Cristian and Bergtholdt, Martin and von Berg, Jens and Schramm, Hauke and Modersitzki, Jan and Meyer, Carsten},
  journal={Computer Vision and Image Understanding},
  volume={176},
  pages={45--53},
  year={2018},
  publisher={Elsevier}
}

Brehmer, Kai and Wacker, Benjamin and Modersitzki, Jan: A Novel Similarity Measure for Image Sequences. in International Workshop on Biomedical Image Registration, pp. 47-56, 2018

@inproceedings{brehmer2018novel,
  title={A Novel Similarity Measure for Image Sequences},
  author={Brehmer, Kai and Wacker, Benjamin and Modersitzki, Jan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={47--56},
  year={2018},
  organization={Springer},
  url={{{https://arxiv.org/abs/1907.09741}}},
  doi={{{10.1007/978-3-319-92258-4_5}}}
}

König, Lars and Rühaak, Jan and Derksen, Alexander and Lellmann, Jan: A matrix-free approach to parallel and memory-efficient deformable image registration. SIAM Journal on Scientific Computing, no. 40, pp. B858-B888, 2018

@article{konig2018matrix,
author = {König, Lars and Rühaak, Jan and Derksen, Alexander and Lellmann, Jan},
journal = {SIAM Journal on Scientific Computing},
title = {A matrix-free approach to parallel and memory-efficient deformable image registration},
year = {2018},
volume = {40},
number = {3},
pages = {B858--B888},
url = {https://arxiv.org/abs/1804.10541},
doi = {10.1137/17M1125522}
}

2017

Korolev, Y. and Lellmann, J.: Image reconstruction with imperfect forward models and applications in deblurring. 2017

@TechReport{KorolevLellmann2017,
  author =      {Korolev, Y. and Lellmann, J.},
  title =       {Image reconstruction with imperfect forward models and applications in deblurring},
  institution = {University of Luebeck},
  year =        {2017},
  type =        {Preprint},
  number =      {arXiv:1708.01244},
  url =         {https://arxiv.org/abs/1708.01244}
}

Rühaak, Jan and Polzin, Thomas and Heldmann, Stefan and Simpson, Ivor J. A. and Handels, Heinz and Modersitzki, Jan and Heinrich, Mattias P.: Estimation of Large Motion in Lung CT by Integrating Regularized Keypoint Correspondences into Dense Deformable Registration. IEEE Transactions on Medical Imaging, no. 36, pp. 1746-1757, IEEE, 2017

@article{ruhaak2017estimation,
  title={Estimation of Large Motion in Lung CT by Integrating Regularized Keypoint Correspondences into Dense Deformable Registration},
  author={R{\"u}haak, Jan and Polzin, Thomas and Heldmann, Stefan and Simpson, Ivor J. A. and Handels, Heinz and Modersitzki, Jan and Heinrich, Mattias P.},
  journal={IEEE Transactions on Medical Imaging},
  volume = {36},
  number = {8},
  pages = {1746--1757},
  year={2017},
  publisher={IEEE}
}

Constantin M. Sandmann: Dynamic Models and Coupling in Medical 4D Imaging. 2017

@phdthesis{2017-PhD-Sandmann,
  Author = {Constantin M. Sandmann},
  Title = {Dynamic Models and Coupling in Medical 4D Imaging},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2017},
}

Mader, Alexander Oliver and Lorenz, Cristian and Bergtholdt, Martin and von Berg, Jens and Schramm, Hauke and Modersitzki, Jan and Meyer, Carsten: Detection and Localization of Landmarks in the Lower Extremities Using an Automatically Learned Conditional Random Field. in Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, pp. 64-75, ringer, 2017

@incollection{mader2017detection,
  title={Detection and Localization of Landmarks in the Lower Extremities Using an Automatically Learned Conditional Random Field},
  author={Mader, Alexander Oliver and Lorenz, Cristian and Bergtholdt, Martin and von Berg, Jens and Schramm, Hauke and Modersitzki, Jan and Meyer, Carsten},
  booktitle={Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics},
  pages={64--75},
  year={2017},
  publisher={Springer}
}

Vogt, Thomas and Lellmann, Jan: An Optimal Transport-Based Restoration Method for Q-Ball Imaging. in Scale Space and Variational Methods in Computer Vision: 6th International Conference, SSVM 2017, Kolding, Denmark, June 4-8, 2017, Proceedings, pp. 271-282, Springer International Publishing, 2017

@INPROCEEDINGS{vogt2017qball,
author={Vogt, Thomas and Lellmann, Jan},
title={An Optimal Transport-Based Restoration Method for Q-Ball Imaging},
booktitle={Scale Space and Variational Methods in Computer Vision: 6th International Conference, SSVM 2017, Kolding, Denmark, June 4-8, 2017, Proceedings},
pages={271--282},
year={2017},
publisher={Springer International Publishing},
editor={Lauze, Fran{\c{c}}ois and Dong, Yiqiu and Dahl, Anders Bjorholm},
doi={{{10.1007/978-3-319-58771-4_22}}}
}

Ruthotto, Lars and Greif, Chen and Modersitzki, Jan: A stabilized multigrid solver for hyperelastic image registration. Numerical Linear Algebra with Applications, no. 24, pp. e2095, ley Online Library, 2017

@article{ruthotto2017stabilized,
  title={A stabilized multigrid solver for hyperelastic image registration},
  author={Ruthotto, Lars and Greif, Chen and Modersitzki, Jan},
  journal={Numerical Linear Algebra with Applications},
  volume={24},
  number={5},
  pages={e2095},
  year={2017},
  publisher={Wiley Online Library}
}

Rust, Caterina and Häger, Stephanie and Traulsen, Nadine and Modersitzki, Jan: A robust algorithm for optic disc segmentation and fovea detection in retinal fundus images. Current Directions in Biomedical Engineering, no. 3, pp. 533-537, Gruyter, 2017

@article{rust3robust,
  title={A robust algorithm for optic disc segmentation and fovea detection in retinal fundus images},
  author={Rust, Caterina and H{\"a}ger, Stephanie and Traulsen, Nadine and Modersitzki, Jan},
  journal={Current Directions in Biomedical Engineering},
  volume={3},
  number={2},
  year={2017},
  pages={533--537},
  publisher={De Gruyter}
}

Rühaak, Jan and König, Lars and Tramnitzke, Florian and Köstler, Harald and Modersitzki, Jan: A Matrix-Free Approach to Efficient Affine-Linear Image Registration on CPU and GPU. Journal of Real-Time Image Processing, no. 13, pp. 205-225, Springer, 2017

@ARTICLE{ruhaak2017matrix,
  author = {R\"{u}haak, Jan and K\"{o}nig, Lars and Tramnitzke, Florian and K\"{o}stler, Harald and Modersitzki, Jan},
  title = {A {M}atrix-{F}ree {A}pproach to {E}fficient {A}ffine-{L}inear {I}mage {R}egistration on {CPU} and {GPU}},
  journal = {{J}ournal of {R}eal-{T}ime {I}mage {P}rocessing},
  year      = {2017},
  volume    = {13},
  number    = {1},
  pages     = {205--225},
  issn      = {1861-8219},
  publisher = {Springer},
  url = {http://dx.doi.org/10.1007/s11554-016-0564-4}
}

2016

Möllenhoff, T. and Laude, E. and Möller, M. and Lellmann, J. and Cremers, D.: Sublabel-Accurate Relaxation of Nonconvex Energies. in Proc. IEEE Conf. Comp. Vis. Patt. Recogn., 2016

@InProceedings{Moellenhoff2016,
  author =    {M{\"o}llenhoff, T. and Laude, E. and M{\"o}ller, M. and Lellmann, J. and Cremers, D.},
  title =     {Sublabel-Accurate Relaxation of Nonconvex Energies},
  booktitle = {Proc. IEEE Conf. Comp. Vis. Patt. Recogn.},
  year =      {2016}
}

Laude, E. and Möllenhoff, T. and Möller, M. and Lellmann, J and Cremers, D.: Sublabel-Accurate Convex Relaxation of Vectorial Multilabel Energies. in Proc. Europ. Conf. Comp. Vision, 2016

@InProceedings{Laude2016,
  author = {Laude, E. and M{\"o}llenhoff, T. and M{\"o}ller, M. and Lellmann, J and Cremers, D.},
  title =  {Sublabel-Accurate Convex Relaxation of Vectorial Multilabel Energies},
  year =   {2016},
  booktitle  = {Proc. Europ. Conf. Comp. Vision}
}

Polzin, Thomas and Niethammer, Marc and Heinrich, Mattias Paul and Handels, Heinz and Modersitzki, Jan: Memory Efficient LDDMM for Lung CT. in Medical Image Computing and Computer-Assisted Intervention 2016, pp. 28-36, Springer, 2016

@INPROCEEDINGS{PolzinEtAl2016,
  author = {Polzin, Thomas and Niethammer, Marc and Heinrich, Mattias Paul and
	Handels, Heinz and Modersitzki, Jan},
  title = {{Memory Efficient LDDMM for Lung CT}},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention 2016},
  pages = {28--36},
  year = {2016},
  publisher = {Springer},
 editor = {Sebastién Ourselin and Leo Joskowicz and Mert R. Sabuncu and Gozde Unal and William Wells}
}

Lotz, Judith M. and Hoffmann, Franziska and Lotz, Johannes and Heldmann, Stefan and Trede, Dennis and Oetjen, Janina and Becker, Michael and Ernst, Günther and Maas, Peter and Alexandrov, Theodore and Guntinas-Lichius, Orlando and Thiele, Herbert and von Eggeling, Ferdinand: Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Elsevier B.V., 2016

@article{Lotz2016Integration,
abstract = {In the last years, matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) became an imaging technique which has the potential to characterize complex tumor tissue. The combination with other modalities and with standard histology techniques was achieved by the use of image registration methods and enhances analysis possibilities. We analyzed an oral squamous cell carcinoma with up to 162 consecutive sections with MALDI MSI, hematoxylin and eosin (H{\&}E) staining and immunohistochemistry (IHC) against CD31. Spatial segmentation maps of the MALDI MSI data were generated by similarity-based clustering of spectra. Next, the maps were overlaid with the H{\&}E microscopy images and the results were interpreted by an experienced pathologist. Image registration was used to fuse both modalities and to build a three-dimensional (3D) model. To visualize structures below resolution of MALDI MSI, IHC was carried out for CD31 and results were embedded additionally. The integration of 3D MALDI MSI data with H{\&}E and IHC images allows a correlation between histological and molecular information leading to a better understanding of the functional heterogeneity of tumors. This article is part of a Special Issue entitled: MALDI Imaging, edited by Dr. Corinna Henkel and Prof. Peter Hoffmann.},
author = {Lotz, Judith M. and Hoffmann, Franziska and Lotz, Johannes and Heldmann, Stefan and Trede, Dennis and Oetjen, Janina and Becker, Michael and Ernst, G{\"{u}}nther and Maas, Peter and Alexandrov, Theodore and Guntinas-Lichius, Orlando and Thiele, Herbert and von Eggeling, Ferdinand},
doi = {10.1016/j.bbapap.2016.08.018},
issn = {15709639},
journal = {Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics},
keywords = {3D,Head and Neck Cancer,MALDI imaging,OSCC,image registration,immunohistochemistry,multimodality},
pmid = {27594533},
publisher = {Elsevier B.V.},
title = {{Integration of 3D multimodal imaging data of a head and neck cancer and advanced feature recognition}},
year = {2016}
}

Lee, J. and Cai, X. and Lellmann, J. and Dalponte, M. and Malhi, Y. and Butt, N. and Morecroft, M. and Schönlieb, C.-B. and Coomes, D.: Individual Tree Species Classification From Airborne Multisensor Imagery Using Robust PCA. Appl. Earth Obs. Remote Sensing, 2016

@Article{LeeCaiLellmannEtAl2016,
  author =  {Lee, J. and Cai, X. and Lellmann, J. and Dalponte, M. and Malhi, Y. and Butt, N. and Morecroft, M. and Schönlieb, C.-B. and Coomes, D.},
  title =   {Individual Tree Species Classification From Airborne Multisensor Imagery Using Robust {PCA}},
  journal = {Appl. Earth Obs. Remote Sensing},
  year =    {2016},
  note =    {In Press.}
}

Stützer, Kristin and Haase, Robert and Lohaus, Fabian and Barczyk, Steffen and Exner, Florian and Löck, Steffen and Rühaak, Jan and Lassen-Schmidt, Bianca and Corr, Dörte and Richter, Christian: Evaluation of a deformable registration algorithm for subsequent lung computed tomography imaging during radiochemotherapy. Medical Physics, no. 43, pp. 5028-5039, Wiley Online Library, 2016

@article{stutzer2016evaluation,
  title={Evaluation of a deformable registration algorithm for subsequent lung computed tomography imaging during radiochemotherapy},
  author={St{\"u}tzer, Kristin and Haase, Robert and Lohaus, Fabian and Barczyk, Steffen and Exner, Florian and L{\"o}ck, Steffen and R{\"u}haak, Jan and Lassen-Schmidt, Bianca and Corr, D{\"o}rte and Richter, Christian},
  journal={Medical Physics},
  volume={43},
  number={9},
  pages={5028--5039},
  year={2016},
  publisher={Wiley Online Library}
}

König, Lars and Derksen, Alexander and Papenberg, Nils and Haas, Benjamin: Deformable image registration for adaptive radiotherapy with guaranteed local rigidity constraints. Radiation Oncology, no. 11, pp. 122, BioMed Central, 2016

@article{konig2016deformable,
  title={Deformable image registration for adaptive radiotherapy with guaranteed local rigidity constraints},
  author={K{\"o}nig, Lars and Derksen, Alexander and Papenberg, Nils and Haas, Benjamin},
  journal={Radiation Oncology},
  volume={11},
  number={1},
  pages={122},
  year={2016},
  publisher={BioMed Central},
doi={10.1186/s13014-016-0697-4}
}

Derksen, A and König, L and Meine, H: An Alternating Image Registration Approach for Large Scale Bladder Deformations in Radiation Therapy. 18th International Conference on the use of Computers in Radiation Therapy (ICCR), London, 2016

@article{derksen2016alternating,
  title={An Alternating Image Registration Approach for Large Scale Bladder Deformations in Radiation Therapy},
  author={Derksen, A and König, L and Meine, H},
  journal={18th International Conference on the use of Computers in Radiation Therapy (ICCR), London},
  year={2016},
}

Constantin Sandmann and Erlend Hodneland and Jan Modersitzki: A practical guideline for T1 reconstruction from various flip angles in MRI. Journal of Algorithms & Computational Technology, no. 10, pp. 213-223, 2016

@article{SandmannEtAl2016,
author = {Constantin Sandmann and Erlend Hodneland and Jan Modersitzki},
title = {A practical guideline for T1 reconstruction from various flip angles in MRI},
journal = {Journal of Algorithms \& Computational Technology},
volume = {10},
number = {4},
pages = {213-223},
year = {2016},
URL = {http://dx.doi.org/10.1177/1748301816656288},
abstract = { A fast and robust method for T1 estimation in MRI is the so-called variable flip angle technique. We introduce a novel family of T1 reconstruction methods from data acquired with various flip angles and propose a family member which combines the robustness of a nonlinear- with the computational advantages of a linear reconstruction. The constructed family contains the most common approaches for T1 estimation, namely a linear and a nonlinear approach. A general sensitivity analysis for arbitrary members of the family is established. Advantages of the optimized reconstruction are demonstrated on phantom- as well as real data, showing improvements of up to 24\% as compared with the linear method. As a further means to stabilize T1 estimation, spatial stabilization methods are compared. We demonstrate on phantom and on real data that improved results can be obtained if not only T1 but also a second unknown M0 in the reconstruction is stabilized. }
}

Derksen, A and König, L and Meine, H and Heldmann, S: A Joint Registration and Segmentation Approach for Large Bladder Deformations in Adaptive Radiotherapy. Medical Physics: Proceedings of the AAPM 58th annual meeting, Washington, DC, no. 43, pp. 3429-3429, American Association of Physicists in Medicine, 2016

@article{derksen2016joint,
  title={A Joint Registration and Segmentation Approach for Large Bladder Deformations in Adaptive Radiotherapy},
  author={Derksen, A and König, L and Meine, H and Heldmann, S},
  journal={Medical Physics: Proceedings of the AAPM 58th annual meeting, Washington, DC},
  volume={43},
  number={6},
  pages={3429--3429},
  year={2016},
  doi={10.1118/1.4956005},
  publisher={American Association of Physicists in Medicine}
}

2015

V De Luca and T Benz and S Kondo and L König and D Lübke and S Rothlübbers and O Somphone and S Allaire and M A Lediju Bell and D Y F and A Cifor and C Grozea and M Günther and J Jenne and T Kipshagen and M Kowarschik and N Navab and J Rühaak and J Schwaab and C Tanner: The 2014 liver ultrasound tracking benchmark. Physics in Medicine and Biology, no. 60, pp. 5571, 2015

@article{deluca2015the,
  author={V De Luca and T Benz and S Kondo and L König and D Lübke and S Rothlübbers and O Somphone and S Allaire and M A Lediju Bell and D Y F
Chung and A Cifor and C Grozea and M Günther and J Jenne and T Kipshagen and M Kowarschik and N Navab and J Rühaak and J Schwaab and C
Tanner},
  title={The 2014 liver ultrasound tracking benchmark},
  journal={Physics in Medicine and Biology},
  volume={60},
  number={14},
  pages={5571},
  url={http://dx.doi.org/10.1088/0031-9155/60/14/5571},
  year={2015}
}

Lotz, J and Olesch, J and Müller, B and Polzin, T and Galuschka, P and Lotz, J M and Heldmann, S and Laue, H and Warth, A and Lahrmann, B and Grabe, N and Sedlaczek, O and Breuhahn, K and Modersitzki, J: Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images. IEEE Transactions on Biomedical Engineering, no. 63, pp. 1812-1819, 2015

@article{Lotz2015,
abstract = {Objective: Image Registration of whole slide histology images allows the fusion of fine-grained information - like different immunohistochemical stains - from neighboring tissue slides. Traditionally, pathologists fuse this information by looking subsequently at one slide at a time. If the slides are digitized and accurately aligned at cell-level, automatic analysis can be used to ease the pathologist's work. However, the size of those images exceeds the memory capacity of regular computers. Methods: We address the challenge to combine a global motion model that takes the physical cutting process of the tissue into account with image data that is not simultaneously globally available. Typical approaches either reduce the amount of data to be processed or partition the data into smaller chunks to be processed separately. Our novel method first registers the complete images on a low resolution with a nonlinear deformation model and later refines this result on patches by using a second nonlinear registration on each patch. Finally the deformations computed on all patches are combined by interpolation to form one globally smooth nonlinear deformation. The NGF distance measure is used to handle multi-stain images. Results: The method is applied to ten whole slide image pairs of human lung cancer data. The alignment of 85 corresponding structures is measured by comparing manual segmentations from neighboring slides. Their offset improves significantly, by at least 15 %, compared to the low-resolution nonlinear registration. Conclusion/Significance: The proposed method significantly improves the accuracy of multi-stain registration which allows to compare different anti-bodies at cell-level. available. Typical approaches either reduce the amount of data to be processed or partition the data into smaller chunks to be processed separately. Our novel method first registers the complete images on a low resolution with a nonlinear deformation model and later refines this result on patches by using a second nonlinear registration on each patch. Finally the deformations computed on all patches are combined by interpolation to form one globally smooth nonlinear deformation. The NGF distance measure is used to handle multi-stain images.Results: The method is applied to ten whole slide image pairs of human lung cancer data. The alignment of 85 corresponding structures is measured by comparing manual segmentations from neighboring slides. Their offset improves significantly, by at least 15 %, compared to the low-resolution nonlinear registration. Conclusion/Significance: The proposed method significantly improves the accuracy of multi-stain registration which allows to compare different anti-bodies at cell-level.},
author = {Lotz, J and Olesch, J and M{\"{u}}ller, B and Polzin, T and Galuschka, P and Lotz, J M and Heldmann, S and Laue, H and Warth, A and Lahrmann, B and Grabe, N and Sedlaczek, O and Breuhahn, K and Modersitzki, J},
doi = {10.1109/TBME.2015.2503122},
journal = {IEEE Transactions on Biomedical Engineering},
keywords = {computer-aided diagnosis,digital pathology,high resolution histological scans ,histopathology, image registration},
title = {{Patch-Based Nonlinear Image Registration for Gigapixel Whole Slide Images}},
year = {2015},
volume = {63},
number = {9},
pages = {1812--1819}
}

Pompe, Esther and van Rikxoort, Eva M and Schmidt, Michael and Rühaak, Jan and Estrella, Leticia Gallardo and Vliegenthart, Rozemarijn and Oudkerk, Matthijs and de Koning, Harry J and van Ginneken, Bram and de Jong, Pim A and Lammers, Jan-Willem J and Hoesein, Firdaus A A Mohamed: Parametric Response Mapping Adds Value to Current Computed Tomography Biomarkers in Diagnosing Chronic Obstructive Pulmonary Disease. American Journal of Respiratory and Critical Care Medicine, no. 191, pp. 1084-1086, Am Thoracic Soc, 2015

@article{pompe2015parametric,
  title={Parametric Response Mapping Adds Value to Current Computed Tomography Biomarkers in Diagnosing Chronic Obstructive Pulmonary Disease},
  author={Pompe, Esther and van Rikxoort, Eva M and Schmidt, Michael and R{\"u}haak, Jan and Estrella, Leticia Gallardo and Vliegenthart, Rozemarijn and Oudkerk, Matthijs and de Koning, Harry J and van Ginneken, Bram and de Jong, Pim A and Lammers, Jan-Willem J and Hoesein, Firdaus A A Mohamed},
  journal={American {J}ournal of {R}espiratory and {C}ritical {C}are {M}edicine},
  volume={191},
  number={9},
  pages={1084--1086},
  year={2015},
  url={http://www.atsjournals.org/doi/abs/10.1164/rccm.201411-2105LE#.VebzExG8PRY},
  publisher={Am Thoracic Soc}
}

König, Lars and Derksen, Alexander and Hallmann, Marc and Papenberg, Nils: Parallel and Memory Efficient Multimodal Image Registration for Radiotherapy using Normalized Gradient Fields. in IEEE International Symposium on Biomedical Imaging: From Nano to Macro, New York City, USA, April, 2015

@INPROCEEDINGS{konig2015parallel,
	author = {K\"{o}nig, Lars and Derksen, Alexander and Hallmann, Marc and Papenberg, Nils},
	booktitle = {IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
	title = {Parallel and Memory Efficient Multimodal Image Registration for Radiotherapy using Normalized Gradient Fields},
	year = {2015},
	address = {New York City, USA},
	month = {April},
        url = {http://dx.doi.org/10.1109/ISBI.2015.7163977}
}

J. Modersitzki and S. Heldmann and N. Papenberg: Nonlinear Registration Via Displacement Fields. in Brain Mapping, pp. 307 - 314, Academic Press, Waltham, 2015

@incollection{Modersitzki2015307,
title = {Nonlinear Registration Via Displacement Fields},
editor = {Toga, Arthur W.},
booktitle = {Brain Mapping},
publisher = {Academic Press},
edition = {},
address = {Waltham},
year = {2015},
pages = {307 - 314},
isbn = {978-0-12-397316-0},
doi = {http://dx.doi.org/10.1016/B978-0-12-397025-1.00300-6},
url = {http://www.sciencedirect.com/science/article/pii/B9780123970251003006},
author = {J. Modersitzki and S. Heldmann and N. Papenberg},
keywords = {Displacement fields, Image fusion,Image registration, Nonlinear registration, Variational formulation},
abstract = {Abstract This article presents a brief review on nonlinear registration techniques based on a variational formulation. The main advantages of this setting are its great modeling potential and its modular setting. This enables easy changes and adaptations for fine-tuning for particular applications. Furthermore, this setting also enables the integration of additional information. This can be formulated in terms of either soft or hard constraints, such as privileged handling of anatomical landmarks, local rigidity of structures, and emphasis on volume preservation or limitations of volume changes. The latter is of particular interest for one-to-one displacement fields (also known as diffeomorphic registration). The setting is supported by a rigorous mathematical theory and can be translated into fast and stable implementations. Although the focus of this article is not on the practical realization, important concepts such as multiscale and multilevel representations and reduction of ambiguities of results based on proper regularization are also briefly discussed.},
}

Weiss, Nick and Lotz, Johannes and Modersitzki, Jan: Multimodal Image Registration in Digital Pathology Using Cell Nuclei Densities. in Bildverarbeitung für die Medizin 2015, Algorithmen – Systeme – Anwendungen, Proceedings des Workshops vom 15. bis 17. März 2015 in Lübeck, pp. 245, Springer Vieweg, Berlin, Heidelberg, mar,, 2015

@inproceedings{Weiss2015,
abstract = {Abstract. 3D reconstruction and digital double staining offer pathologists many new insights into tissue structure and metabolism. Key to these applications is the precise registration of histological slide images, that is challenging in several ways. One major challenge are differently stained slides, that highlight different parts of the tissue. In this paper we introduce a new registration method to face this multimodality. It abstracts the image information to cell nuclei densities. By minimizing the distance of these densities an affine transformation is determined that restores the lost spatial correspondences. The proposed density based registration is evaluated using consecutive histological slides. It is compared to a Mutual Information based registration and shown to be more accurate and robust.},
address = {Berlin, Heidelberg},
author = {Weiss, Nick and Lotz, Johannes and Modersitzki, Jan},
booktitle = {Bildverarbeitung f\"{u}r die Medizin 2015, Algorithmen – Systeme – Anwendungen, Proceedings des Workshops vom 15. bis 17. M\"{a}rz 2015 in L\"{u}beck},
doi = {10.1007/978-3-662-46224-9},
editor = {Handels, Heinz and Deserno, Thomas M. and Meinzer, Hans-Peter and Tolxdorff, Thomas},
file = {:home/jo/Seafile/misc/mendeley/Weiss, Lotz, Modersitzki - 2015 - Multimodal Image Registration in Digital Pathology Using Cell Nuclei Densities.pdf:pdf},
isbn = {9783662462232},
month = mar,
pages = {245},
publisher = {Springer Vieweg},
title = {{Multimodal Image Registration in Digital Pathology Using Cell Nuclei Densities}},
year = {2015}
}

Derksen, Alexander and Heldmann, Stefan and Polzin, Thomas and Berkels, Benjamin: Image registration with sliding motion constraints for 4D CT motion correction. in Bildverarbeitung für die Medizin 2015, Algorithmen – Systeme – Anwendungen, Proceedings des Workshops vom 15. bis 17. März 2015 in Lübeck, pp. 335-340, Springer, Berlin, Heidelberg, March,, 2015

@inproceedings{2015-BVM-dhpb-sliding,
  title={Image registration with sliding motion constraints for 4D CT motion correction},
  author={Derksen, Alexander and Heldmann, Stefan and Polzin, Thomas and Berkels, Benjamin},
  pages={335--340},
  year={2015},
  publisher={Springer},
  address = {Berlin, Heidelberg},
  booktitle = {Bildverarbeitung f\"{u}r die Medizin 2015, Algorithmen – Systeme –   Anwendungen, Proceedings des Workshops vom 15. bis 17. M\"{a}rz 2015 in L\"{u}beck},
  editor = {Handels, Heinz and Deserno, Thomas M. and Meinzer, Hans-Peter and Tolxdorff, Thomas},
  isbn = {9783662462232},
  month = March,
  url = {http://dx.doi.org/10.1007/978-3-662-46224-9_58},
  series = {Informatik aktuell},
  abstract = {A common assumption in medical image registration is that the estimation of a globally continuous deformation field is plausible in reality. However, a sliding behavior of adjacent organ boundaries (e.g. lung and ribcage) cannot be described in a plausible way by a continuous deformation field. In this paper, we address this issue with a novel registration framework that explicitly models sliding of interfaces and can preserve discontinuities in the deformation field along predefined organ boundaries. Incorporated methods involve constrained nonlinear registration and a finite element discretization on unstructured tetrahedral meshes. Evaluation is based on the freely available DIR-Lab datasets.}
}

König, L and Derksen, A and Heldmann, S and Papenberg, N and Modersitzki, J and Haas, B: Deformable image registration with guaranteed local rigidity. Radiotherapy and Oncology: Proceedings of the 3rd ESTRO Forum, Barcelona, no. 115, pp. S197-S198, Elsevier, 2015

@article{konig2015deformable,
  title={Deformable image registration with guaranteed local rigidity},
  author={K{\"o}nig, L and Derksen, A and Heldmann, S and Papenberg, N and Modersitzki, J and Haas, B},
  journal={Radiotherapy and Oncology: Proceedings of the 3rd ESTRO Forum, Barcelona},
  volume={115},
  pages={S197--S198},
  year={2015},
  publisher={Elsevier},
doi={10.1016/S0167-8140(15)40405-0}
}

Chen, Kanglin and Derksen, Alexander and Heldmann, Stefan and Hallmann, Marc and Berkels, Benjamin: Deformable Image Registration with Automatic Non-Correspondence Detection. in Scale Space and Variational Methods in Computer Vision: 5th International Conference, SSVM 2015, Lège-Cap Ferret, France, May 31 - June 4, 2015, Proceedings, pp. 360-371, Springer International Publishing, Cham, 2015

@inproceedings{Chen2015Deformable,
title={Deformable Image Registration with Automatic Non-Correspondence Detection},
author={Chen, Kanglin and Derksen, Alexander and Heldmann, Stefan and Hallmann, Marc and Berkels, Benjamin},
editor={Aujol, Jean-Fran{\c{c}}ois and Nikolova, Mila and Papadakis, Nicolas},
booktitle={Scale Space and Variational Methods in Computer Vision: 5th International Conference, SSVM 2015, L{\`e}ge-Cap Ferret, France, May 31 - June 4, 2015, Proceedings},
year={2015},
publisher={Springer International Publishing},
address={Cham},
pages={360--371},
isbn={978-3-319-18461-6},
doi={10.1007/978-3-319-18461-6_29},
url={http://dx.doi.org/10.1007/978-3-319-18461-6_29}
}

Lellmann, J. and Papafitsoros, K. and Schönlieb, C. and Spector, D.: Analysis and Application of a non-local Hessian. SIAM Journal on Imaging Sciences, no. 8, pp. 2161-2202, 2015

@Article{Lellmann2015,
  author =      {Lellmann, J. and Papafitsoros, K. and Sch\"onlieb, C. and Spector, D.},
  title =       {Analysis and Application of a non-local Hessian},
  journal =     {SIAM Journal on Imaging Sciences},
  year =        {2015},
  volume =      {8},
  number =      {4},
  pages =       {2161--2202},
  owner =       {Jan},
  timestamp =   {2014.07.02},
}

Stefan Heldmann and Thomas Polzin and Alexander Derksen and Benjamin Berkels: An Image Registration Framework for Sliding Motion with Piecewise Smooth Deformations. in Scale Space and Variational Methods in Computer Vision, no. 9087, pp. 335-347, Springer International, Lège-Cap Ferret, France, May/June, 2015

@inproceedings{2015-hpdb-SSVM,
author = {Stefan Heldmann and Thomas Polzin and Alexander Derksen and Benjamin Berkels},
title = {An Image Registration Framework for Sliding Motion with Piecewise Smooth Deformations},
booktitle = {Scale Space and Variational Methods in Computer Vision},
year = {2015},
month = {May/June},
abstract = {We present a novel variational framework for image registration with explicit modeling of sliding motion, as it occurs, e.g., in the medical context at organ boundaries. The key of our method is a piecewise smooth deformation model that allows for discontinuities at the sliding interfaces while keeping the sliding domain in contact with its surrounding. The presented approach is generic and can be used with a large class of both image similarity measures and regularizers for the deformations. A useful byproduct of the proposed method is an automatic propagation of a given segmentation from one image to the other. We proof existence of minimizers under rather mild assumptions and present an efficient scheme for computing a numerical solution. The minimization is based on a splitting approach with alternating derivative based Gauss-Newton and fast first order convex optimization. Finally, we evaluate the proposed method on synthetic and real data.},
series = {Lecture Notes in Computer Science},
pages = {335--347},
address = {Lège-Cap Ferret, France},
publisher = {Springer International},
volume = {9087},
editor = {Jean-François Aujol and Mila Nikolova and Nicolas Papadakis},
}

Rühaak, Jan and Derksen, Alexander and Heldmann, Stefan and Hallmann, Marc and Meine, Hans: Accurate CT-MR image registration for deep brain stimulation: a multi-observer evaluation study. in SPIE Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February, 2015

@INPROCEEDINGS{2015-SPIE-RDHHM,
	author = {R\"{u}haak, Jan and Derksen, Alexander and Heldmann, Stefan and Hallmann, Marc and Meine, Hans},
	booktitle = {SPIE Medical Imaging 2015: Image Processing},
	title = {Accurate CT-MR image registration for deep brain stimulation: a multi-observer evaluation study},
	year = {2015},
	address = {Orlando, Florida, USA},
	month = {February}	
}

Chen, Kanglin and Derksen, Alexander: A Variational Method for Contructing Unbiased Atlas with Probabilistic Label Maps. in Workshop: Bildverarbeitung für die Medizin, 2015

@INPROCEEDINGS{2015-BVM-CD,
	author = {Chen, Kanglin and Derksen, Alexander},
	booktitle = {Workshop: Bildverarbeitung für die Medizin},
	title = {A Variational Method for Contructing Unbiased Atlas with Probabilistic Label Maps},
	year = {2015},
	address = {},
	month = {}	
}

Papenberg, Nils and König, Lars and Heldmann, Stefan and Derksen, Alexander and Modersitzki, Jan and Haas, Benjamin: A Locally Variable Transformation Model for Deformable Image Registration Using Tissue Properties. in Varian Research Partnership Symposium, Atlanta, Georgia, USA, March, 2015

@INPROCEEDINGS{papenberg2015locally,
	author = {Papenberg, Nils and König, Lars and Heldmann, Stefan and Derksen, Alexander and Modersitzki, Jan and Haas, Benjamin},
	booktitle = {Varian Research Partnership Symposium},
	title = {A Locally Variable Transformation Model for Deformable Image Registration Using Tissue Properties},
	year = {2015},
	address = {Atlanta, Georgia, USA},
	month = {March}	
}

Wang, Lei and Strehlow, Jan and Rühaak, Jan and Diez, Yago and Diekmann, Susanne and Laue, Hendrik and Hahn, Horst K.: A fast alignment method for breast MRI follow-up studies using automated breast segmentation and current-prior registration. in SPIE Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February, 2015

@INPROCEEDINGS{2015-SPIE-WSRDDLH,
	author = {Wang, Lei and Strehlow, Jan and R\"{u}haak, Jan and Diez, Yago and Diekmann, Susanne and Laue, Hendrik and Hahn, Horst K.},
	booktitle = {SPIE Medical Imaging 2015: Image Processing},
	title = {A fast alignment method for breast MRI follow-up studies using automated breast segmentation and current-prior registration},
	year = {2015},
	address = {Orlando, Florida, USA},
	month = {February}	
}

Kappes, J.~H. and Andres, B. and Hamprecht, F. A. and Schnörr, C. and Nowozin, S. and Batra, D. and Kim, S. and Kausler, B. X. and Kröger, T and Lellmann, J. and Komodakis, N. and Savchynskyy, B. and Rother, C.: A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems. Int.~J.~Comp.~Vis, 2015

@Article{Kappes2015,
  Title                    = {A Comparative Study of Modern Inference Techniques for Discrete Energy Minimization Problems},
  Author                   = {Kappes, J.~H. and Andres, B. and Hamprecht, F. A. and Schn\"orr, C. and Nowozin, S. and Batra, D. and Kim, S. and Kausler, B. X. and Kröger, T and Lellmann, J. and Komodakis, N. and Savchynskyy, B. and Rother, C.},
  Journal                  = {Int.~J.~Comp.~Vis},
  Year                     = {2015},
  Note                     = {(online first)},
}

2014

Johannes Lotz and Judith Berger and Benedikt Müller and Kai Breuhahn and Niels Grabe and Stefan Heldmann and Andr\`e Homeyer and Bernd Lahrmann and Hendrik Laue and Janine Olesch and Michael Schwier and Oliver Sedlaczek and Arne Warth: Zooming in: High Resolution 3D Reconstruction of Differently Stained Histological Whole Slide Images. in SPIE Medical Imaging, pp. 904104-1-7, 2014

@inproceedings{lotz2014zooming,
  title={Zooming in: High Resolution 3D Reconstruction of Differently Stained Histological Whole Slide Images},
  author={Johannes Lotz and Judith Berger and Benedikt M\"uller and Kai Breuhahn and Niels Grabe and Stefan Heldmann and Andr\'{e} Homeyer and Bernd Lahrmann and Hendrik Laue and Janine Olesch and Michael Schwier and Oliver Sedlaczek and Arne Warth
},
  booktitle={SPIE Medical Imaging},
  year={2014},
  organization={International Society for Optics and Photonics},
pages = {904104-1--7}
}

Björn Beuthien: Restringierte Medizinische Bildregistrierung. 2014

@phdthesis{2014-PhD-Beuthien,
  Author = {Bj\"orn Beuthien},
  Title = {Restringierte Medizinische Bildregistrierung},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2014},
}

Heck, Constantin and Ruthotto, Lars and Modersitzki, Jan and Berkels, Benjamin: Model-based parameter estimation in DCE-MRI without an Arterial Input Function. in BVM 2014, Bildverarbeitung für die Medizin 2014, pp. 246-251, 2014

@Inproceedings{{2014}}-BVM-HRMB,
	Author={Heck, Constantin and Ruthotto, Lars and Modersitzki, Jan and Berkels, Benjamin},
booktitle={BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Date-Added={2014-01-22 13:52:07 +0000},
	Date-Modified={2014-01-22 13:54:28 +0000},
	Title={Model-based parameter estimation in DCE-MRI without an Arterial Input Function},
year={2014},
pages={246--251},
}

Polzin, Thomas and Rühaak, Jan and Werner, Ren\`e and Handels, Heinz and Modersitzki, Jan: Lung Registration using Automatically Detected Landmarks. Methods of Information in Medicine, no. 53, pp. 250-256, 2014

@ARTICLE{2014-MIM-PRWHM, 
  author = {Polzin, Thomas and R\"{u}haak, Jan and Werner, Ren\'{e} and Handels, Heinz and Modersitzki, Jan},
  title = {Lung Registration using Automatically Detected Landmarks},
  journal = {Methods of Information in Medicine},
  year = {2014},
  volume={53},
  pages={250--256}
}

Georgii, J and Bartscherer, T and Degel, C and Fonfara, H and Hewener, H and Kipshagen, T and Kocev, B and Lotz, J and Ojdanic, D and Olesch, J and Rothlübbers, S and Speicher, D and Tretbar, S and Hahn, H and Günther, M: Improving Breast Biopsies by Motion Tracking. Proc. of Image-Guided Interventions. in Proc. of Image-Guided Interventions (IGIC), pp. 79-80, 2014

@inproceedings{georgi2014IGIC,
author = {Georgii, J and Bartscherer, T and Degel, C and Fonfara, H and Hewener, H and Kipshagen, T and Kocev, B and Lotz, J and Ojdanic, D and Olesch, J and Rothlübbers, S and Speicher, D and Tretbar, S and Hahn, H and Günther, M},
title = { Improving Breast Biopsies by Motion Tracking. Proc. of Image-Guided Interventions},
booktitle = {Proc. of Image-Guided Interventions (IGIC)},
pages = {79-80},
year = {2014}
}

Berg, Roelof and König, Lars and Rühaak, Jan and Lausen, Ralph and Fischer, Bernd: Highly Efficient Image Registration for Embedded Systems Using a Distributed Multicore DSP Architecture. Journal of Real-Time Image Processing, Springer, November, 2014

@ARTICLE{2014-JRTIP-BKRLF,
  author = {Berg, Roelof and K\"{o}nig, Lars and R\"{u}haak, Jan and Lausen, Ralph and Fischer, Bernd},
  title = {{H}ighly {E}fficient {I}mage {R}egistration for {E}mbedded {S}ystems
	{U}sing a {D}istributed {M}ulticore {DSP} {A}rchitecture},
  journal = {{J}ournal of {R}eal-{T}ime {I}mage {P}rocessing},
  year = {2014},
  month = {November},
  publisher = {Springer},
  url = {http://dx.doi.org/10.1007/s11554-014-0457-3}
}

Tramnitzke, Florian and Rühaak, Jan and König, Lars and Modersitzki, Jan and Köstler, Harald: GPU Based Affine Linear Image Registration using Normalized Gradient Fields. in Proc. Seventh International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI), pp. 5-14, Boston, USA, September, 2014

@INPROCEEDINGS{2014-MICCAI-HPC-TRKMK,
  author = {Tramnitzke, Florian and R\"{u}haak, Jan and K\"{o}nig, Lars and Modersitzki, Jan and K\"{o}stler, Harald},
  title = {{GPU} {B}ased {A}ffine {L}inear {I}mage {R}egistration
using {N}ormalized {G}radient {F}ields},
  booktitle = {Proc. Seventh International Workshop on High Performance Computing for Biomedical Image Analysis (HPC-MICCAI)},
  year = {2014},
  address = {Boston, USA},
  month = {September},
pages = {5--14}
}

Trull, Anna Katharina and Berkels, Benjamin and Modersitzki, Jan: Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI using a Separable Compartment Model and Parameter Elimination. in BVM 2014, Bildverarbeitung für die Medizin 2014, pp. 30-35, 2014

@inproceedings{2014-BVM-TBM,
	Author = {Trull, Anna Katharina and Berkels, Benjamin and Modersitzki, Jan },
Booktitle = {BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Title = {Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI using a Separable Compartment Model and Parameter Elimination},
year={2014},
pages = {30--35}
}

Sorrentino,S and Peperhove,M and Kaireit,T and Rühaak,J and Strehlow,J and Wacker,F and Vogel-Claussen,J and Shin,H: Entwicklung eines virtuellen 2D-Herz-Phantoms für die regionaler myokardialer Wandbewegung mittels nicht-rigider Bildregistrierung. Fortschritte auf dem Gebiet der Röntgenstrahlen und der bildgebenden Verfahren, no. 186, pp. RK\_VO207\_4, 2014

@INPROCEEDINGS{sorrentino2014Entwicklung,
  author = {Sorrentino,S and Peperhove,M and Kaireit,T and R{\"u}haak,J and Strehlow,J
	and Wacker,F and Vogel-Claussen,J and Shin,H},
  title = {{E}ntwicklung eines virtuellen 2{D}-{H}erz-{P}hantoms f{\"u}r die
	{B}erechnung regionaler myokardialer {W}andbewegung mittels nicht-rigider
	{B}ildregistrierung},
  year = {2014},
  volume = {186},
  number = {S 01},
  pages = {RK{\_}VO207{\_}4},
  bdsk-url-1 = {http://dx.doi.org/10.1055/s-0034-1372881},
  da = {22.04.2014},
  date = {2014///},
  date-added = {2014-07-10 15:19:06 +0000},
  date-modified = {2014-07-10 15:19:06 +0000},
  doi = {10.1055/s-0034-1372881},
  isbn = {1438-9029},
  journal = {{F}ortschritte auf dem Gebiet der {R}{\"o}ntgenstrahlen und der bildgebenden Verfahren},
  la = {DE},
  m2 = {RK{\_}VO207{\_}4},
  ty = {JOUR}
}

Johannes Lotz and Judith Berger and Herbert Thiele and Janine Olesch and Benedikt Müller and Kai Breuhahn and Arne Warth and Niels Grabe and Bernd Lahrmann and Oliver Sedlaczek and Stefan Heldmann: Elastic image registration on whole slide images for digital double staining and 3D reconstruction. in Poster Submission at the European Molecular Imaging Meeting - EMIM, 2014

@inproceedings{lotz2014elastic,
  title={Elastic image registration on whole slide images for digital double staining and 3D reconstruction},
  author={Johannes Lotz and Judith Berger and Herbert Thiele and Janine Olesch and Benedikt Müller and Kai Breuhahn and Arne Warth  and Niels Grabe and Bernd Lahrmann and Oliver Sedlaczek and Stefan Heldmann
},
  booktitle={Poster Submission at the European Molecular Imaging Meeting - EMIM},
  year={2014},
  url = {http://s.fhg.de/wwu},
  organization={European Society for Molecular Imaging}
}

Robert Haase and Fabian Lohaus and Jan Rühaak and Dörte van Straaten and Klaus Zöphel and Christian Richter: Einfluss deformierbarer Bildregistrierung von PET/CT-Verlaufsdaten auf die Signalwerte innerhalb einer Kontur: Deformation auf Konturen oder Bilddaten anwenden?. in Proceedings of 20. Jahrestagung der Deutschen Gesellschaft für Radioonkologie (DEGRO), Düsseldorf, 2014

@inproceedings{2014-DEGRO-HLRSZR,
title={Einfluss deformierbarer {B}ildregistrierung von {P}{E}{T}/{C}{T}-{V}erlaufsdaten auf die {S}ignalwerte innerhalb einer {K}ontur: {D}eformation auf {K}onturen oder {B}ilddaten anwenden?},
author={Robert Haase and Fabian Lohaus and Jan R\"uhaak and D\"orte van Straaten and Klaus Z\"ophel and Christian Richter},
booktitle={Proceedings of 20. Jahrestagung der Deutschen Gesellschaft f\"ur Radioonkologie (DEGRO), D\"usseldorf},
year={2014}
}

Chen, Kanglin and Heldmann, Stefan and Rühaak, Jan and Hallmann, Marc: Construction of Average STN Atlas using Image Registration and Reconstruction. in Proc. MICCAI 2014 Workshop on Deep Brain Stimulation Methodological Challenges - 2nd Edition, Boston, USA, September, 2014

@INPROCEEDINGS{2014-DBS-CHRH,
	author = {Chen, Kanglin and Heldmann, Stefan and R\"{u}haak, Jan and Hallmann, Marc},
	booktitle = {Proc. MICCAI 2014 Workshop on Deep Brain Stimulation Methodological Challenges - 2nd Edition},
	title = {Construction of Average STN Atlas using Image Registration and Reconstruction},
	year = {2014},
	address = {Boston, USA},
	month = {September}	
}

Bronsert, P and Enderle-Ammour, K and Bader, M and Timme, S and Kuehs, M and Csanadi, A and Kayser, G and Kohler, I and Bausch, D and Hoeppner, J and Hopt, UT and Keck, T and Stickeler, E and Passlick, B and Schilling, O and Reiss, CP and Vashist, Y and Brabletz, T and Berger, J and Lotz, J and Olesch, J and Werner, M and Wellner, UF: Cancer cell invasion and EMT marker expression - a three-dimensional study of the human cancer-host interface -. The Journal of Pathology, John Wiley & Sons, Ltd, 2014

@article {PATH:PATH4416,
author = {Bronsert, P and Enderle-Ammour, K and Bader, M and Timme, S and Kuehs, M and Csanadi, A and Kayser, G and Kohler, I and Bausch, D and Hoeppner, J and Hopt, UT and Keck, T and Stickeler, E and Passlick, B and Schilling, O and Reiss, CP and Vashist, Y and Brabletz, T and Berger, J and Lotz, J and Olesch, J and Werner, M and Wellner, UF},
title = {Cancer cell invasion and EMT marker expression - a three-dimensional study of the human cancer-host interface -},
journal = {The Journal of Pathology},
publisher = {John Wiley & Sons, Ltd},
issn = {1096-9896},
url = {http://dx.doi.org/10.1002/path.4416},
pages = {},
keywords = {cancer cell invasion, epithelial-mesenchymal transition, tumor budding, human adenocarcinoma, three dimensional reconstruction},
year = {2014}
}

Janine Olesch: Bildregistrierung für die navigierte Chirurgie. Springer Vieweg, 2014

@BOOK{Olesch201311,
title={Bildregistrierung für die navigierte Chirurgie},
series = {Aktuelle Forschung Medizintechnik},
author={Janine Olesch},
publisher={Springer Vieweg},
year={2014},
isbn={9783658056544},
price={EUR 59,99},
totalpages={267}
}

Dennis Trede and Andreas Bartels and Stefan Schiffler and Janina Oetjen and Michael Becker and Michaela Aichler and Florian Lieb and Klaus Steinhorst and Judith Berger and Stefan Heldmann and Herbert Thiele and Axel Walch and Peter Maass and Theodore Alexandrov: A spatially-aware highly-sensitive peak picking method for MALDI-imaging. 2014

@Misc{trede2014DGMS,
  author = 	 {Dennis Trede and Andreas Bartels and Stefan Schiffler and Janina Oetjen and Michael Becker and Michaela Aichler and Florian Lieb and Klaus Steinhorst and Judith Berger and Stefan Heldmann and Herbert Thiele and Axel Walch and Peter Maass and Theodore Alexandrov},
  title = 	 {A spatially-aware highly-sensitive peak picking method for MALDI-imaging},
  note = {Poster Submission at 47. Jahrestagung der Deutschen Gesellschaft für Massenspektrometrie, Frankfurt am Main},
  year = 	 {2014},
  url = 	 {http://www.pharmazie.uni-frankfurt.de/PharmChem/DGMS2014/Programm/Abstracts/Abstracts-Poster.pdf}
}

König, Lars and Kipshagen, Till and Rühaak, Jan: A Non-Linear Image Registration Scheme for Real-Time Liver Ultrasound Tracking using Normalized Gradient Fields. in Proc. MICCAI Challenge on Liver Ultrasound Tracking (CLUST 2014), pp. 29-36, Boston, USA, September, 2014

@INPROCEEDINGS{2014-CLUST-KKR,
	author = {K\"{o}nig, Lars and Kipshagen, Till and R\"{u}haak, Jan},
	booktitle = {Proc. MICCAI Challenge on Liver Ultrasound Tracking (CLUST 2014)},
	title = {A Non-Linear Image Registration Scheme for Real-Time Liver Ultrasound Tracking using Normalized Gradient Fields},
	year = {2014},
	address = {Boston, USA},
	month = {September},
pages = {29--36}
}

König, Lars and Rühaak, Jan: A Fast and Accurate Parallel Algorithm for Non-Linear Image Registration using Normalized Gradient Fields. in IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Beijing, China, April, 2014

@INPROCEEDINGS{2014-ISBI-KR,
	author = {K\"{o}nig, Lars and R\"{u}haak, Jan},
	booktitle = {IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
	title = {A Fast and Accurate Parallel Algorithm for Non-Linear Image Registration using Normalized Gradient Fields},
	year = {2014},
	address = {Beijing, China},
	month = {April}	
        url = {http://dx.doi.org/10.1109/ISBI.2014.6867937}
}

Thiele, Herbert and Heldmann, Stefan and Trede, Dennis and Strehlow, Jan and Wirtz, Stefan and Dreher, Wolfgang and Berger, Judith and Oetjen, Janina and Kobarg, Jan Hendrik and Fischer, Bernd and others: 2D and 3D MALDI-imaging: conceptual strategies for visualization and data mining. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, no. 1844, pp. 117-137, Elsevier, 2014

@article{thiele20142d,
  title={2D and 3D MALDI-imaging: conceptual strategies for visualization and data mining},
  author={Thiele, Herbert and Heldmann, Stefan and Trede, Dennis and Strehlow, Jan and Wirtz, Stefan and Dreher, Wolfgang and Berger, Judith and Oetjen, Janina and Kobarg, Jan Hendrik and Fischer, Bernd and others},
  journal={Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics},
  volume={1844},
  number={1},
  pages={117--137},
  year={2014},
  publisher={Elsevier}
}

2013

Judith Berger and Johannes Lotz and Janine Olesch and Mark Schenk Breuhahn and Benedikt Müller and Arne Warth and Niels Grabe and Bernd Lahrmann and Oliver Sedlaczek: Virtual Double Staining Using Elastic Image Registration. 2013

@Misc{berger2013virtual,
  author = 	 {Judith Berger and Johannes Lotz and Janine Olesch and Mark Schenk
Kai Breuhahn and Benedikt Müller and Arne Warth and Niels Grabe and Bernd Lahrmann and
Oliver Sedlaczek},
  title = 	 {Virtual Double Staining Using Elastic Image Registration},
  note = {Poster Submission at Pathology Visions, San Antonio},
  year = 	 {2013},
  url = 	 {https://digitalpathologyassociation.org/poster-presentations}
}

Lotz, Johannes and Fischer, Bernd and Olesch, Janine and Günther, Matthias: Real time motion analysis in 4D medical imaging using conditional density propagation. in SPIE Medical Imaging 2015: Image Processing, no. 8669, pp. 86690T-86690T-7, 2013

@inproceedings{lotz2013real,
author = {Lotz, Johannes and Fischer, Bernd and Olesch, Janine and Günther, Matthias},
title = {Real time motion analysis in 4D medical imaging using conditional density propagation},
booktitle ={SPIE Medical Imaging 2015: Image Processing},
volume = {8669},
number = {},
pages = {86690T-86690T-7},
abstract = {Motion, like tumor movement due to respiration, constitutes a major problem in radiotherapy and/or diagnostics.
A common idea to compensate for the motion in 4D imaging, is to invoke a registration strategy, which aligns
the images over time. This approach is especially challenging if real time processing of the data and robustness
with respect to noise and acquisition errors is required.
To this end, we present a novel method which is based only on selected image features and uses a probabilistic
approach to compute the wanted transformations of the 3D images. Moreover, we restrict the search space to
rotation, translation and scaling.
In an initial phase, landmarks in the first image of the series have to be identified, which are in the course
of the scheme automatically transferred to the next image. To find the associated transformation parameters,
a probabilistic approach, based on factored sampling, is invoked. We start from a state set containing a fixed
number of different candidate parameters whose probabilities are approximated based on the image information
at the landmark positions. Subsequent time frames are analyzed by factored sampling from this state set and
by superimposing a stochastic diffusion term on the parameters.
The algorithm is successfully applied to clinical 4D CT data. Landmarks have been placed manually to mark
the tumor or a similar structure in the initial image whose position is then tracked over time. We achieve a
processing rate of up to 12 image volumes per second. The accuracy of the tracking after five time steps is
measured based on expert placed landmarks. We achieve a mean landmark error of less than 2 mm in each
dimension in a region with radius of 25 mm around the target structure.},
year = {2013},
doi = {10.1117/12.2006842},
URL = { http://dx.doi.org/10.1117/12.2006842},
eprint = {}
}

Oetjen, Janina and Aichler, Michaela and Trede, Dennis and Strehlow, Jan and Berger, Judith and Heldmann, Stefan and Becker, Michael and Gottschalk, Michael and Kobarg, Jan Hendrik and Wirtz, Stefan and Schiffler, Stefan and Thiele, Herbert and Walch, Axel and Maass, Peter and Alexandrov, Theodore: MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation. Journal of Proteomics, no. 90, pp. 52-60, 2013

@article{2013-JP-OATSBHBGKWSTWMA,
	Author = {Oetjen, Janina and Aichler, Michaela and Trede, Dennis and Strehlow, Jan and Berger, Judith and Heldmann, Stefan and Becker, Michael and Gottschalk, Michael and Kobarg, Jan Hendrik and Wirtz, Stefan and Schiffler, Stefan and Thiele, Herbert and Walch, Axel and Maass, Peter and Alexandrov, Theodore},
	Journal = {Journal of Proteomics},
	Pages = {52--60},
	Title = {MRI-compatible pipeline for three-dimensional MALDI imaging mass spectrometry using PAXgene fixation},
	Volume = {90},
	Year = {2013}}

Polzin, T and Rühaak, J and Werner, R and Handels, H and Modersitzki, J: Lung Registration using Automatically Detected Landmarks. in GMDS 2013: 58. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V., Lübeck, Germany, September, 2013

@INPROCEEDINGS{2013-GMDS-PRWHM,
  author = {Polzin, T and R{\"u}haak, J and Werner, R and Handels, H and Modersitzki, J},
 booktitle = {GMDS 2013: 58. Jahrestagung der Deutschen Gesellschaft f{\"u}r Medizinische Informatik, Biometrie und Epidemiologie e. V.},
title = {Lung Registration using Automatically Detected Landmarks},
year = {2013},
address = {Lübeck, Germany},
month = {September}
}

Ruthotto, Lars and Mohammadi, Siawoosh and Heck, Constantin and Modersitzki, Jan and Weiskopf, Nikolaus: Hyperelastic Susceptibility Artifact Correction of DTI in SPM. in Bildverarbeitung für die Medizin 2013, pp. 344-349, Springer Berlin Heidelberg, 2013

@incollection{2013-BVM-RMHMW,
	Author = {Ruthotto, Lars and Mohammadi, Siawoosh and Heck, Constantin and Modersitzki, Jan and Weiskopf, Nikolaus},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2013},
	Doi = {10.1007/978-3-642-36480-8_60},
	Editor = {Meinzer, Hans-Peter and Deserno, Thomas Martin and Handels, Heinz and Tolxdorff, Thomas},
	Isbn = {978-3-642-36479-2},
	Language = {German},
	Pages = {344-349},
	Publisher = {Springer Berlin Heidelberg},
	Series = {Informatik aktuell},
	Title = {Hyperelastic Susceptibility Artifact Correction of DTI in SPM},
	Url = {http://dx.doi.org/10.1007/978-3-642-36480-8_60},
	Year = {2013},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-642-36480-8_60}}

Rühaak, Jan and Heldmann, Stefan and Kipshagen, Till and Fischer, Bernd: Highly Accurate Fast Lung CT Registration. in SPIE Medical Imaging 2013: Image Processing, Lake Buena Vista, Florida, USA, February, 2013

@INPROCEEDINGS{2013-SPIE-RHKF,
	author = {R\"{u}haak, Jan and Heldmann, Stefan and Kipshagen, Till and Fischer, Bernd},
	booktitle = {SPIE Medical Imaging 2013: Image Processing},
	title = {Highly Accurate Fast Lung CT Registration},
	year = {2013},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}

König, Lars and Papenberg, Nils and Haas, Benjamin and Modersitzki, Jan: Deformable Registration for Adaptive Radiotherapy with Guaranteed Local Rigidity Constraints. in Varian Research Partnership Symposium, Atlanta, Georgia, USA, March, 2013

@INPROCEEDINGS{2013-Deformable,
	author = {K\"{o}nig, Lars and Papenberg, Nils and Haas, Benjamin and Modersitzki, Jan},
	booktitle = {Varian Research Partnership Symposium},
	title = {Deformable Registration for Adaptive Radiotherapy with Guaranteed Local Rigidity Constraints},
	year = {2013},
	address = {Atlanta, Georgia, USA},
	month = {March}	
}

Dagmar Kainmüller: Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data. 2013

@phdthesis{2013-PhD-Kainmueller,
  Author = {Dagmar Kainm\"uller},
  Title = {Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2013},
}

Polzin, Thomas and Rühaak, Jan and Werner, Ren\`e and Strehlow, Jan and Heldmann, Stefan and Handels, Heinz and Modersitzki, Jan: Combining Automatic Landmark Detection and Variational Methods for Lung CT Registration. in Proc. Fifth International MICCAI Workshop on Pulmonary Image Analysis (PIA 2013), pp. 85-96, Nagoya, Japan, September, 2013

@INPROCEEDINGS{2013-PIA-PRWSHHM,
	author = {Polzin, Thomas and R\"{u}haak, Jan and Werner, Ren\'{e} and Strehlow, Jan and Heldmann, Stefan and Handels, Heinz and Modersitzki, Jan},
	booktitle = {Proc. Fifth International MICCAI Workshop on Pulmonary Image Analysis (PIA 2013)},
	title = {Combining Automatic Landmark Detection and
Variational Methods for Lung CT Registration},
	year = {2013},
	address = {Nagoya, Japan},
	month = {September},
       pages = {85--96}
}

Janine Olesch: Bildregistrierung für die navigierte Chirurgie. 2013

@phdthesis{OleschPhD201311_2,
title={Bildregistrierung f\"ur die navigierte Chirurgie},
author={Janine Olesch},
School = {Institute of Medical Informatics, University of L\"ubeck},
year={2013},
}

Barendt, Sven and Modersitzki, Jan: A variational model for SPECT reconstruction with a nonlinearly transformed attenuation prototype. International Journal of Computer Mathematics, no. 90, pp. 82-91, 2013

@article{BarendtModersitzkiIJCM2013,
  author = {Barendt, Sven and Modersitzki, Jan},
  title = {A variational model for SPECT reconstruction with a nonlinearly transformed attenuation prototype},
  journal = {International Journal of Computer Mathematics},
  volume = {90},
  number = {1},
  pages = {82-91},
  year = {2013}
}

Burger, M. and Modersitzki, J. and Ruthotto, L.: A hyperelastic regularization energy for image registration. SIAM Journal on Scientific Computing, no. 35, pp. B132-B148, SIAM, 2013

@article{BurgerEtAl2013,
  title={A hyperelastic regularization energy for image registration},
  author={Burger, M. and Modersitzki, J. and Ruthotto, L.},
  journal={SIAM Journal on Scientific Computing},
  volume={35},
  number={1},
  pages={B132--B148},
  year={2013},
  publisher={SIAM}
}

Peter, Thomas and Plonka, Gerlind: A Generalized Prony Method for Reconstruction of Sparse Sums of Eigenfunctions of Linear Operators. (revised preprint as download). Inverse Problems, no. 29, January, 2013

@article{PP2013,
	author = {Peter, Thomas and Plonka, Gerlind},
	title = {A Generalized Prony Method for Reconstruction of Sparse Sums of Eigenfunctions of Linear Operators. (revised preprint as download)},
        journal={Inverse Problems},
  volume={29},
  number={2},
	year = {2013},
	month = {January}	
}

Rühaak, Jan and König, Lars and Hallmann, Marc and Papenberg, Nils and Heldmann, Stefan and Schumacher, Hanno and Fischer, Bernd: A Fully Parallel Algorithm for Multimodal Image Registration Using Normalized Gradient Fields. in IEEE International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, California, USA, April, 2013

@INPROCEEDINGS{2013-ISBI-RKHPHSF,
	author = {R\"{u}haak, Jan and K\"{o}nig, Lars and Hallmann, Marc and Papenberg, Nils and Heldmann, Stefan and Schumacher, Hanno and Fischer, Bernd},
	booktitle = {IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
	title = {A Fully Parallel Algorithm for Multimodal Image Registration Using Normalized Gradient Fields},
	year = {2013},
	address = {San Francisco, California, USA},
	month = {April}	
url = {http://dx.doi.org/10.1109/ISBI.2013.6556539}
}

Mueller, B and Olesch, J and Lotz, J and Barendt, S and Sedlaczek, O and Lahrmann, B and Grabe, N and Bestvater, F and Kauczor, U and Schnabel, P A and Hoffmann, H and Fischer, B and Schirmacher, P and Warth, A and Breuhahn, K: 3D reconstruction of lung adenocarcinomas—one module for the development of mathematical multiscale models of lung cancer. in Abstracts of the 97th Annual Meeting of the German Society of Pathology. May 23-26, 2013. Heidelberg. Germany. Der Pathologe, no. 34 Suppl 1, pp. 6-163, Springer-Verlag, may,, 2013

@abstract{Mueller2013,
author = {Mueller, B and Olesch, J and Lotz, J and Barendt, S and Sedlaczek, O and Lahrmann, B and Grabe, N and Bestvater, F and Kauczor, U and Schnabel, P A and Hoffmann, H and Fischer, B and Schirmacher, P and Warth, A and Breuhahn, K},
booktitle = {Abstracts of the 97th Annual Meeting of the German Society of Pathology. May 23-26, 2013. Heidelberg. Germany. Der Pathologe},
issn = {1432-1963},
keywords = {Animals,Humans,Pathology},
month = may,
number = {1},
pages = {6--163},
pmid = {23636587},
publisher = {Springer-Verlag},
title = {{3D reconstruction of lung adenocarcinomas—one module for the development of mathematical multiscale models of lung cancer}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/23636587},
volume = {34 Suppl 1},
year = {2013}
}

Thiele, Herbert and Heldmann, Stefan and Trede, Dennis and Strehlow, Jan and Wirtz, Stefan and Dreher, Wolfgang and Berger, Judith and Oetjen, Janina and Kobarg, Jan Hendrik and Fischer, Bernd and Maass, Peter: 2D and 3D MALDI-imaging: Conceptual strategies for visualization and data mining. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013

@article{2013-BBA-THTSWDBOKFM,
	Author = {Thiele, Herbert and Heldmann, Stefan and Trede, Dennis and Strehlow, Jan and Wirtz, Stefan and Dreher, Wolfgang and Berger, Judith and Oetjen, Janina and Kobarg, Jan Hendrik and Fischer, Bernd and Maass, Peter},
	Journal = {Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics},
	Title = {2D and 3D MALDI-imaging: Conceptual strategies for visualization and data mining},
	Year = {2013}}

2012

Rühaak, Jan and Heldmann, Stefan: Variational Lung Registration with Explicit Boundary Alignment. February, 2012

@misc{2012-RH-EMPIRE10,
  title={Variational Lung Registration with Explicit Boundary Alignment},
  author={Rühaak, Jan and Heldmann, Stefan},
  institution={The EMPIRE10 challenge},
  month = {February},
  year={2012}
}

Barendt, Sven and Modersitzki, Jan: SPECT Reconstruction with a Transformed Attenuation Prototype at Multiple Levels. in Bildverarbeitung für die Medizin 2012, pp. 352-357, Springer, 2012

@inproceedings{BarendtModersitzkiBVM2012,
  title={SPECT Reconstruction with a Transformed Attenuation Prototype at Multiple Levels},
  author={Barendt, Sven and Modersitzki, Jan},
 booktitle={Bildverarbeitung f{\"u}r die Medizin 2012},
 pages     = {352-357},
  year={2012},
  publisher={Springer}
}

Ruthotto, L. and Hodneland, E. and Modersitzki,J.: Registration of Dynamic Contrast Enhanced MRI with Local Rigidity Constraint. in Biomedical Image Registration, 5th International Workshop WBIR2012, Springer, 2012

@inproceedings{2012-DCEMRI-WBIR,
	title={Registration of Dynamic Contrast Enhanced {MRI} with Local Rigidity Constraint},
  	author={Ruthotto, L. and Hodneland, E. and  Modersitzki,J.},
 	booktitle={Biomedical Image Registration, 5th International Workshop {WBIR2012}},
  	year={2012},
	editor={Dawant B.M., Fitzpatrick J.M., Rueckert D., and Christensen G.E.},
  	publisher={Springer}
}

F. Gigengack and L. Ruthotto and T. Kösters and X. Jiang and J. Modersitzki and M. Burger and C.H. Wolters and K. Schäfers: Pipeline for Motion Correction in Dual Gated PET. in Nuclear Science Symposium and Medical Imaging Confereence (NSS/MIC), 2012 IEEE, pp. 2983-2984, 2012

@INPROCEEDINGS{2012-GigengackEtAl-NSS-MIC-B,
  author = {F. Gigengack and L. Ruthotto and T. K{\"o}sters and X. Jiang and
	J. Modersitzki and M. Burger and C.H. Wolters and K. Schäfers},
  title = {Pipeline for Motion Correction in Dual Gated PET},
  booktitle = {Nuclear Science Symposium and Medical Imaging Confereence (NSS/MIC), 2012 IEEE},
  year = {2012},
  pages = {2983--2984}
}

Gigengack, Fabian and Ruthotto, Lars and Burger, Martin and Wolters, Carsten H and Jiang, Xiaoyi and Schäfers, Klaus P: Motion Correction in Dual Gated Cardiac PET using Mass-Preserving Image Registration. IEEE Transactions on Medical Imaging, no. 31, pp. 698-712, 2012

@article{2012-VAMPIRE-IEEE,
author = {Gigengack, Fabian and Ruthotto, Lars and Burger, Martin and Wolters, Carsten H and Jiang, Xiaoyi and Sch{\"a}fers, Klaus P},
title = {{Motion Correction in Dual Gated Cardiac PET using Mass-Preserving Image Registration}},
journal = {IEEE Transactions on Medical Imaging},
year = {2012},
volume = {31},
number = {3},
pages = {698--712},
}

Lars Ruthotto: Hyperelastic Image Registration - Theory, Numerical Methods, and Applications. 2012

@phdthesis{2012-PhD-Ruthotto,
  Author = {Lars Ruthotto},
  Title = {Hyperelastic Image Registration - Theory, Numerical Methods, and Applications},
  School = {Fachbereich Mathematik und Informatik, Westfälische Wilhelms-Universität Münster},
  Year = {2012},
}

Trede, Dennis and Schiffler, Stefan and Becker, Michael and Wirtz, Stefan and Steinhorst, Klaus and Strehlow, Jan and Aichler, Michaela and Kobarg, Jan Hendrik and Oetjen, Janina and Heldmann, Stefan and Walch, Axel and Thiele, Herbert and Maass, Peter and Alexandrov, Theodore: Exploring 3D MALDI imaging mass spectrometry data: 3D spatial segmentation of mouse kidney. Analytical Chemistry, no. 84(14), pp. 6079-87, 2012

@article{2012-AC-TSBWSSAKOHWTMA,
	Author = {Trede, Dennis and Schiffler, Stefan and Becker, Michael and Wirtz, Stefan and Steinhorst, Klaus and Strehlow, Jan and Aichler, Michaela and Kobarg, Jan Hendrik and Oetjen, Janina and Heldmann, Stefan and Walch, Axel and Thiele, Herbert and Maass, Peter and Alexandrov, Theodore},
	Journal = {Analytical Chemistry},
	Pages = {6079-87},
	Title = {Exploring 3D MALDI imaging mass spectrometry data: 3D spatial segmentation of mouse kidney},
	Volume = {84(14)},
	Year = {2012}}

Strehlow, Jan and Rühaak, Jan and Kluck, Christina and Fischer, Bernd: Effiziente Verpunktung pulmonaler MR-Bilder zur Evaluierung von Registrierungsergebnissen. in Bildverarbeitung für die Medizin 2012, pp. 219-224, Springer, 2012

@INPROCEEDINGS{2012-BVM-SRKF,
   author = {Strehlow, Jan and R\"{u}haak, Jan and Kluck, Christina and Fischer, Bernd},
   booktitle = {Bildverarbeitung f{\"u}r die Medizin 2012},
   title = {Effiziente Verpunktung pulmonaler MR-Bilder zur Evaluierung von Registrierungsergebnissen},
   series = {Informatik aktuell},
   publisher = {Springer}
   year = {2012},   
   pages = {219-224},
}

Ruthotto, L and Kugel, H and Olesch, J and Fischer, B and Modersitzki, J and Burger, M and Wolters, CH: Diffeomorphic Susceptibility Artefact Correction of Diffusion-Weighted Magnetic Resonance Images. Physics in Medicine and Biology, no. 57, pp. 5715-5731, 2012

@article{RuthottoEtAl2012,
author = {Ruthotto, L and Kugel, H and Olesch, J and Fischer, B and Modersitzki, J and Burger, M and Wolters, CH},
title = {Diffeomorphic Susceptibility Artefact Correction of Diffusion-Weighted Magnetic Resonance Images},
journal = {Physics in Medicine and Biology},
year = {2012},
volume={57},
pages = {5715--5731},
url={http://stacks.iop.org/0031-9155/57/5715}
}

Gigengack, Fabian and Ruthotto, Lars and Jiang, Xiaoyi and Modersitzki, and Burger, Martin and Hermann, Sven and Schäfers, Klaus P.: Atlas-Based Whole-Body PET-CT Segmentation using a Passive Contour Distance. in Proceedings of the MICCAI Workshop on Medical Computer Vision 2012, pp. 1-10, Springer LNCS, 2012

@INPROCEEDINGS{2012-GigengackEtAl-MICCAI,
  author = {Gigengack, Fabian and Ruthotto, Lars and Jiang, Xiaoyi and Modersitzki,
	Jan and Burger, Martin and Hermann, Sven and Sch{\"a}fers, Klaus
	P.},
  title = {Atlas-Based Whole-Body {PET-CT} Segmentation using a Passive Contour
	Distance},
  booktitle = {Proceedings of the MICCAI Workshop on Medical Computer Vision 2012},
  year = {2012},
  pages = {1--10},
  publisher = {Springer LNCS}
}

Ruthotto, L. and Gigengack, F. and Burger, M. and Wolters, C.H., and Jiang, X. and Schäfers, K. and Modersitzki,J.: A Simplified Pipeline for Motion Correction in Dual Gated Cardiac PET. in Bildverarbeitung für die Medizin 2012, Springer, 2012

@inproceedings{2012-VAMPIRE-BVM,
  title={A Simplified Pipeline for Motion Correction in Dual Gated Cardiac {PET}},
  author={Ruthotto, L. and Gigengack, F. and Burger, M. and Wolters, C.H., and Jiang, X. and Sch{\"a}fers, K. and           	
		  Modersitzki,J.},
 booktitle={Bildverarbeitung f{\"u}r die Medizin 2012},
  year={2012},
  publisher={Springer}
}

Thiele, H. and Heldmann, S. and Fischer, B.: 3D Visualisierung von Organismen. in Proceedings der INFORMATIK 2012, no. 208, pp. 1535-1545, Gesellschaft für Informatik, Bonn, 2012

@inproceedings{2012-INF-THF,
	Address = {Bonn},
	Author = {Thiele, H. and Heldmann, S. and Fischer, B.},
	Booktitle = {Proceedings der INFORMATIK 2012},
	Editor = {Goltz, U. and Magnor, M. and Appelrath, H-J and Matthies, HK and Balke, W-T and Wolf, L.},
	Pages = {1535--1545},
	Publisher = {Gesellschaft f{\"u}r Informatik},
	Series = {GI-Editon Lecture Notes in Informatics},
	Title = {3D Visualisierung von Organismen},
	Volume = {208},
	Year = {2012}}

2011

B. Göbel and D. Langemann: Systemic investigation of a brain-centered model of the human energy metabolism. Theory Biosci, no. 130, pp. 5-18, 2011

@ARTICLE{2011-TB-GL,
  author = {B. G\"obel and D. Langemann},
  title = {Systemic investigation of a brain-centered model of the human energy
	metabolism},
  journal = {Theory Biosci},
  year = {2011},
  volume = {130},
  pages = {5-18},
  number = {1},
  owner = {BrittaGoebel},
  timestamp = {2010.12.09}
}

Barendt, Sven and Modersitzki, Jan: SPECT Reconstruction with a Nonlinear Transformed Attenuation Prototype. in Bildverarbeitung für die Medizin, 2011

@inproceedings{2011-BVM-BM,
  author    = {Barendt, Sven and Modersitzki, Jan},
  title     = {SPECT Reconstruction with a Nonlinear Transformed Attenuation Prototype},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
  year      = {2011},
  Series = {Informatik aktuell},
  }

J. Hamer and M. Kleine and S. Barendt and J. Krajewski and J. Konitzer and E. Gáspár and B. Meller and J. Knobloch and M. Russlies and I. Buchmann and J. Barkhausen and J. Modersitzki and G. Ebel and T. M. Buzug: Molecular Imaging of Inflammations at Implant Interfaces (M4I) - Part of Molecular Imaging North Competence Center (MOIN CC). Biomed Tech, no. 56, 2011

@article{MOINCCBioTech2011,
  author = {J. Hamer and M. Kleine and S. Barendt and J. Krajewski and J. Konitzer and E. Gáspár and B. Meller and J. Knobloch and M. Russlies and I. Buchmann and J. Barkhausen and J. Modersitzki and G. Ebel and T. M. Buzug},
  title = {Molecular Imaging of Inflammations at Implant Interfaces (M4I) -
	Part of Molecular Imaging North Competence Center (MOIN CC)},
  journal = {Biomed Tech},
  year = {2011},
  volume = {56},
}

Thomas Lange: Modeling Prior Knowledge for Image Registration in Liver Surgery. 2011

@phdthesis{2011-PhD-Lange,
  Author = {Thomas Lange},
  Title = {Modeling Prior Knowledge for Image Registration in Liver Surgery},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2011},
}

Britta Göbel: Mathematische Modellierung des menschlichen Energiestoffwechsels: Die zentrale Rolle des Gehirns. 2011

@phdthesis{2011-PhD-Goebel,
  Author = {Britta G\"obel},
  Title = {Mathematische Modellierung des menschlichen Energiestoffwechsels: Die zentrale Rolle des Gehirns},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2011},
}

M. Chung and B. Göbel: Mathematical Modeling of the Human Energy Metabolism based on the Selfish Brain Theory. Advances in Systems Biology, Springer, no. (in press), 2011

@ARTICLE{2011-Springer-CG,
  author = {M. Chung and B. Göbel},
  title = {Mathematical Modeling of the Human Energy Metabolism based on the
	Selfish Brain Theory},
  journal = {Advances in Systems Biology, Springer},
  year = {2011},
  volume = {(in press)},
  owner = {BrittaGoebel},
  timestamp = {2011.05.15}
}

M. Chung and B. Göbel and A. Peters and K.M. Oltmanns and A. Moser: Mathematical modeling of the biphasic dopaminergic response to glucose. J Biomed Sci Eng, no. 4, pp. 136-145, 2011

@ARTICLE{2011-JBSE-CGPOM,
  author = {M. Chung and B. G\"obel and A. Peters and K.M. Oltmanns and A. Moser},
  title = {Mathematical modeling of the biphasic dopaminergic response to glucose},
  journal = {J Biomed Sci Eng},
  year = {2011},
  volume = {4},
  pages = {136-145},
  owner = {BrittaGoebel},
  timestamp = {2011.03.23}
}

Gigengack, F. and Ruthotto, L. and Burger, M. and Wolters, C.H. and Jiang, X. and Schäfers, K.P.: Mass-Preserving Motion Correction of PET: Displacement Field vs. Spline Transformation. in Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE, pp. 3088-3090, 2011

@inproceedings{2011-VAPIRE-MICspline,
  title={Mass-Preserving Motion Correction of PET: Displacement Field vs. Spline Transformation},
  author={Gigengack, F. and Ruthotto, L. and Burger, M. and Wolters, C.H. and Jiang, X. and Sch{\"a}fers, K.P.},
 booktitle={Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE},
  year={2011},
   pages={3088--3090},
 organization={IEEE}
}

Rühaak, Jan and Heldmann, Stefan and Fischer, Bernd: Improving Lung Registration by Incorporating Anatomical Knowledge: A Variational Approach. in Proc. Fourth International MICCAI Workshop on Pulmonary Image Analysis (PULMO 2011), Toronto, Canada, September, 2011

@INPROCEEDINGS{2011-MICCAI-PULMO-RHF,
	author = {R\"{u}haak, Jan and Heldmann, Stefan and Fischer, Bernd},
	booktitle = {Proc. Fourth International MICCAI Workshop on Pulmonary Image Analysis (PULMO 2011)},
	title = {Improving Lung Registration by Incorporating Anatomical Knowledge: A Variational Approach},
	year = {2011},
	address = {Toronto, Canada},
	month = {September},
}

Olesch, Janine and Fischer, Bernd: Focussed registration of tracked 2D US to 3D CT data of the liver. in Bildverarbeitung für die Medizin, 2011

@inproceedings{2011-BVM-OF,
  author    = {Olesch, Janine and Fischer, Bernd},
  title     = {Focussed registration of tracked 2D US to 3D CT data of the liver},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
  year      = {2011},
  Series = {Informatik aktuell},
  }

Olesch, Janine and Beuthien, Björn and Heldmann, Stefan and Papenberg, Nils and Fischer, Bernd: Fast intra-operative nonlinear registration of 3D-CT to tracked, selected 2D-ultrasound slices. in SPIE Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling, Lake Buena Vista, Florida, USA, February, 2011

@INPROCEEDINGS{2011-SPIE-OBHPF,
	author = {Olesch, Janine and Beuthien, Björn and Heldmann, Stefan and Papenberg, Nils and Fischer, Bernd},
	booktitle = {SPIE Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling},
	title = {Fast intra-operative nonlinear registration of 3D-CT to tracked, selected 2D-ultrasound slices},
	year = {2011},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}

Zimmer, Veronika and Papenberg, Nils and Modersitzki, Jan and Fischer, Bernd: Bildregistrierung zur Verbrennungsanalyse. in Bildverarbeitung für die Medizin 2011, pp. 159-163, Springer, 2011

@INPROCEEDINGS{2011-BVM-ZPMF,
  author = {Zimmer, Veronika and Papenberg, Nils and Modersitzki, Jan and Fischer,
	Bernd},
  title = {Bildregistrierung zur Verbrennungsanalyse},
  booktitle = {Bildverarbeitung f\"ur die Medizin 2011},
  year = {2011},
  editor = {H Handels},
  pages = {159--163},
  publisher = {Springer}
}

Moltz, Jan Hendrik and Braunewell, Stefan and Rühaak, Jan and Heckel, Frank and Barbieri, Sebastiano and Tautz, Lennart and Hahn, Horst Karl and Peitgen, Heinz-Otto: Analysis of Variability in Manual Liver Tumor Delineation in CT Scans. in 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Chicago, Illinois, USA, March, 2011

@INPROCEEDINGS{2011-ISBI-MBRHBTHP,
	author = {Moltz, Jan Hendrik and Braunewell, Stefan and R\"{u}haak, Jan and Heckel, Frank and Barbieri, Sebastiano and Tautz, Lennart and Hahn, Horst Karl and Peitgen, Heinz-Otto},
	booktitle = {8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
	title = {Analysis of Variability in Manual Liver Tumor Delineation in CT Scans},
	year = {2011},
	address = {Chicago, Illinois, USA},
	month = {March}	
}

Moltz, Jan Hendrik and Rühaak, Jan and Hahn, Horst Karl and Peitgen, Heinz-Otto: A Novel Adaptive Scoring System for Segmentation Validation with Multiple Reference Masks. in SPIE Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February, 2011

@INPROCEEDINGS{2011-SPIE-MRHP,
	author = {Moltz, Jan Hendrik and R\"{u}haak, Jan and Hahn, Horst Karl and Peitgen, Heinz-Otto},
	booktitle = {SPIE Medical Imaging 2011: Image Processing},
	title = {A Novel Adaptive Scoring System for Segmentation Validation with Multiple Reference Masks},
	year = {2011},
	address = {Lake Buena Vista, Florida, USA},
	month = {February}	
}

2010

Beuthien, B. and Papenberg, B. and Heldmann, S. and Fischer, B.: Volume-constrained image registration for pre- and post-operative CT liver data. in SPIE Medical Imaging, San Diego, California, USA, February, 2010

@INPROCEEDINGS{2010-SPIE-BPHF,
  author    = {Beuthien, B. and Papenberg, B. and Heldmann, S. and Fischer, B.},
  title     = {Volume-constrained image registration for pre- and post-operative {CT} liver data},
  booktitle = {SPIE Medical Imaging},
  year      = {2010},
  address   = {San Diego, California, USA},
  month     = {February}}

Moltz, Jan Hendrik and Rühaak, Jan and Engel, Christiane and Kayser, Ulrike and Peitgen, Heinz-Otto: Validation of Liver Tumor Segmentation in CT Scans by Relating Manual and Algorithmic Performance - A Preliminary Study. in Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT 2010), Beijing, China, September, 2010

@INPROCEEDINGS{2010-MICCAI-CIBT-MREKP,
	author = {Moltz, Jan Hendrik and R\"{u}haak, Jan and Engel, Christiane and Kayser, Ulrike and Peitgen, Heinz-Otto},
	booktitle = {Proc. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT 2010)},
	title = {Validation of Liver Tumor Segmentation in CT Scans by Relating Manual and Algorithmic Performance - A Preliminary Study},
	year = {2010},
	address = {Beijing, China},
	month = {September},
	url = {http://midasjournal.com/download/viewpdf/754/1/download} 
}

Ruppertshofen, Heike and Kabus, Sven and Fischer, Bernd: Tensor Grid Based Image Registration with Application to Ventilation Estimation on 4D CT Lung Data. International Journal of Computer Assisted Radiology and Surgery, 2010

@article{2010-IJCARS-RKF,
	Author = {Ruppertshofen, Heike and Kabus, Sven and Fischer, Bernd},
	Journal = {International Journal of Computer Assisted Radiology and Surgery},
	Title = {Tensor Grid Based Image Registration with Application to Ventilation Estimation on {4D CT} Lung Data},
	Year = {2010}
}

Beuthien, Björn and Kamen, Ali and Fischer, Bernd: Recursive Green`s Function Registration. in Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2010

@INPROCEEDINGS{2010-MICCAI-BKF,
  author = {Beuthien, Bj\"{o}rn and Kamen, Ali and Fischer, Bernd},
  title = {Recursive Green's Function Registration},
  booktitle = {Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)},
  year = {2010}
}

Haber, Eldad and Horesh, R. and Modersitzki, Jan: Numerical Methods for Constrained Image Registration. Numerical Linear Algebra with Applications, no. 17, pp. 343-359, 2010

@ARTICLE{2010-NLAA-HHM,
  author = {Haber, Eldad and Horesh, R. and Modersitzki, Jan},
  title = {Numerical Methods for Constrained Image Registration},
  journal = {Numerical Linear Algebra with Applications},
  volume = {17},
  number = {2-3},
  year = {2010},
  pages = {343--359},
 }

Papenberg, N. and Schumacher, H. and Heldmann, S. and Böhler, T. and van Straaten, D. and Wirtz, S.: Multimodale Registrierung von Knochen-Szintigraphien und Röntgenbildern. in Bildverarbeitung für die Medizin, pp. 335-339, 2010

@inproceedings{2010-BVM-PSHBSW,
	Author = {Papenberg, N. and Schumacher, H. and Heldmann, S. and B{\"o}hler, T. and van Straaten, D. and Wirtz, S.},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin},
	Pages = {335--339},
	Title = {Multimodale Registrierung von Knochen-Szintigraphien und R{\"o}ntgenbildern},
	Year = {2010}}

Heldmann, Stefan: Multimodal Registration of MR Images with a Novel Least-squares Distance Measure. Medical Imaging 2010: Image Processing, SPIE, February, 2010

@conference{2010-SPIE-H,
  author = {Heldmann, Stefan},
  title = {Multimodal Registration of {MR} Images with a Novel Least-squares Distance Measure},
  journal = {Medical Imaging 2010: Image Processing },
  Xvolume = {7623},
  year = {2010},
  publisher={SPIE},
  month={February},
  DOI={10.1117/12.844466},
  adress={San Diego},
}

Konstantin Ens: Kombinierte Segmentierung und Registrierung. 2010

@phdthesis{2010-PhD-Ens,
  Author = {Konstantin Ens},
  Title = {Kombinierte Segmentierung und Registrierung},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2010},
}

Heldmann, Stefan and Beuthien, Björn and Olesch, Janine and Papenberg, Nils and Fischer, Bernd: Improved Minimal-Invasive Laparoscopic Liver Surgery by Registration of 3D CT and 2D Ultrasound Slices. in BMT 2010 - FAL-Sessions, Hot-Topic Sessions, Projektsessions (BMT 2010 - FAL-Sessions - Hot-Topic Sessions - Projektsessions), Rostock, Germany, 2010

@inproceedings{2010-BMT-HBOPF,
	Address = {Rostock, Germany},
	Author = {Heldmann, Stefan and Beuthien, Bj{\"o}rn  and Olesch, Janine and Papenberg, Nils and Fischer, Bernd},
	Booktitle = {BMT 2010 - FAL-Sessions, Hot-Topic Sessions, Projektsessions (BMT 2010 - FAL-Sessions - Hot-Topic Sessions - Projektsessions)},
	Title = {Improved Minimal-Invasive Laparoscopic Liver Surgery by Registration of 3D CT and 2D Ultrasound Slices},
	Year = {2010},
}

Göbel, Britta and Langemann, Dirk and Oltmanns, Kerstin M. and Chung, Matthias: Compact Energy Metabolism Model: Brain Controlled Energy Supply. Journal of Theoretical Biology, no. 264, pp. 1214-1224, 2010

@article{2010-JTB-GLOC,
title = {Compact Energy Metabolism Model: Brain Controlled Energy Supply},
journal = {Journal of Theoretical Biology},
volume = {264},
pages = {1214-1224},
year = {2010},
issn = {0022-5193},
url = {http://www.sciencedirect.com/science/article/B6WMD-4YM7FS0-1/2/5847c422c6ba837cd32d9438c0f4219e},
author = {G\"{o}bel, Britta and Langemann, Dirk and Oltmanns, Kerstin M. and Chung, Matthias},
keywords = {Energy metabolism},
keywords = {Glucose model},
keywords = {Dynamical system},
keywords = {Stability analysis},
keywords = {Model size reduction},
}

Fischer, Bernd and Dawant, Benoit M. and Lorenz, Cristian: Biomedical Image Registration, 4th International Workshop, WBIR 2010. no. 6204, Springer, 2010

@book{2010-WBIR-FDL,
	Author = {Fischer, Bernd and Dawant, Benoit M. and Lorenz, Cristian },
	Publisher = {Springer},
	Series = {Lecture Notes in Computer Science},
	Title = {Biomedical Image Registration, 4th International Workshop, WBIR 2010},
	Volume = {6204},
	Year = {2010}
}

Pöschl, Christiane and Modersitzki, Jan and Scherzer, Otmar: A Variational Setting for Volume Constrained Image Registration. Inverse Problems and Imaging, no. X, pp. 1-18, 2010

@ARTICLE{2010-IPI-PMS,
  author = { P\"{o}schl, Christiane and Modersitzki, Jan and Scherzer, Otmar},
  title = {A Variational Setting for Volume Constrained Image Registration},
  journal = {Inverse Problems and Imaging},
  volume = {X},
  number = {2-3},
  year = {2010},
  pages = {1-18},
}

Olesch, Janine and Ruthotto, Lars and Kugel, Harald and Skare, Stefan and Fischer, Bernd and Wolters, Carsten H.: A Variational Approach for the Correction of Field-inhomogeneities in EPI Sequences. Medical Imaging 2010: Image Processing, no. 7623, pp. 76230K, SPIE, 2010

@inproceedings{2010-SPIE-ORKSFW,
	Author = {Olesch, Janine and Ruthotto, Lars and Kugel, Harald and Skare, Stefan and Fischer, Bernd and Wolters, Carsten H.},
	Editor = {Benoit M. Dawant and David R. Haynor},
	Journal = {Medical Imaging 2010: Image Processing},
	Location = {San Diego, California, USA},
	Number = {1},
	Numpages = {8},
	Pages = {76230K},
	Publisher = {SPIE},
	Title = {A Variational Approach for the Correction of Field-inhomogeneities in EPI Sequences},
	Volume = {7623},
	Year = {2010}
}

Alvin Ihsani and Jan Modersitzki and Troy Farncombe: A Fully Automated Approach to Segmentation and Registration of 3D Medical Image Data for Pulmonary Diagnosis. in Proceedings of the 3rd Workshop on Pulmonary Image Analysis, 2010, pp. 97-109, Beijing, 2010

@INPROCEEDINGS{2010-Beijing-IFM,
  author = {Alvin Ihsani and Jan Modersitzki and Troy Farncombe},
  title = {A Fully Automated Approach to Segmentation and Registration of {3D}
	Medical Image Data for Pulmonary Diagnosis},
  booktitle = {Proceedings of the 3rd Workshop on Pulmonary Image Analysis, 2010},
  year = {2010},
  pages = {97--109},
  address = {Beijing}
}

2009

Ens, Konstantin and Wenzel, Fabian and Fischer, Bernd: Verbesserung der Symmetrie von Hirnaufnahmen entlang der Sagittalebene. in Bildverarbeitung für die Medizin 2009, pp. 187 - 191, Springer Berlin/ Heidelberg, 2009

@conference{2009-BVM-EWF,
	Author = {Ens, Konstantin and Wenzel, Fabian and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2009},
	Editor = {{H.-P. Meinzer} and T.M. Deserno and H Handels and T Tolxdoff},
	Pages = {187 -- 191},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {Verbesserung der {S}ymmetrie von {H}irnaufnahmen entlang der {S}agittalebene},
	Year = {2009},
	Publisher={Springer Berlin/ Heidelberg},
	DOI={10.1007/978-3-540-93860-6_38},
	ISBN={978-3-540-93859-0},
}

Stefan Wirtz: Registrierung von histologischen Schnitten. 2009

@phdthesis{2009-PhD-Wirtz,
  Author = {Stefan Wirtz},
  Title = {Registrierung von histologischen Schnitten},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2009},
}

Schumacher,Hanno and Modersitzki, Jan and Fischer, Bernd: Reconstruction and motion correction in SPECT imaging - a combined approach. in Proceedings of the 12th Korea-Germany joint workshop on Advanced Medical Image Processing, pp. 32 -41, Munich, 2009

@inproceedings{2009-KOREA-SMF, 
	Address = {Munich},
	Author = {Schumacher,Hanno and Modersitzki, Jan and Fischer, Bernd},
	Booktitle = {Proceedings of the 12th Korea-Germany joint workshop on Advanced Medical Image Processing},
	Pages = {32 --41},
	Title = {Reconstruction and motion correction in {SPECT} imaging -- a combined approach},
	Year = {2009}
}

Conrad, Matthias and Hubold, Christian and Fischer, Bernd and Peters, Achim: Modeling the Hypothalamus-Pituitary-Adrenal System: Homeostasis by Interacting Positive and Negative Feedback. Journal of Biological Physics, no. 35, pp. 149 - 162, Springer, 2009

@article{2009-JBP-CHFA,
	Author = {Conrad, Matthias and Hubold, Christian and Fischer, Bernd and Peters, Achim},
	Journal = {Journal of Biological Physics},
	Pages = {149 -- 162},
	Title = {Modeling the Hypothalamus-Pituitary-Adrenal System: Homeostasis by Interacting Positive and Negative Feedback},
	Volume = {35},
	Number={2},
	Year = {2009},
	publisher={Springer}
	DOI={10.1007/s10867-009-9134-3},
	Bdsk-Url-1 = {http://dx.doi.org/10.1007/s10867-009-9134-3}
}

Olesch, Janine and Papenberg, Nils and Lange, Thomas and Conrad, Matthias and Fischer, Bernd: Matching CT and Ultrasound Data of the Liver by Landmark Constrained Image Registration. Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling, no. 7261,72610G, SPIE, 2009

@inproceedings{2009-SPIE-OPLCF,
	Author = {Olesch, Janine and Papenberg, Nils and Lange, Thomas and Conrad, Matthias and Fischer, Bernd},
	Editor = {Miga, Michael I. and  Wong, Kenneth H..},
	Title = {Matching {CT} and Ultrasound Data of the Liver by Landmark Constrained Image Registration},
	Journal = {Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling},
	Volume = {7261,72610G},
	Year = {2009},
	Numpages = {7},
	Publisher = {SPIE},
}

Lange, Thomas and Papenberg, Nils and Olesch, Janine and Fischer, Bernd and Schlag, Peter M.: Landmark Constrained Non-rigid Image Registration with Anisotropic Tolerances. in World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany, no. 25/IV, pp. 2238-2241, Springer, 2009

@inproceedings{2009-WCMP-LPOFS,
	Author = {Lange, Thomas and Papenberg, Nils and Olesch, Janine and Fischer, Bernd and Schlag, Peter M.},
	Title = {Landmark Constrained Non-rigid Image Registration with Anisotropic Tolerances},
	booktitle = {World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany},
	Editor = {Olaf D\"{o}ssel and Wolfgang C. Schlegel},
	Pages = {2238--2241},
	Publisher = {Springer},
	Series = {IFMBE Proceedings},
	Volume = {25/IV},
	Year = {2009}
}

Papenberg, Nils and Olesch, Janine and Lange, Thomas and Schlag, Peter M. and Fischer, Bernd: Landmark Constrained Non-parametric Image Registration with Isotropic Tolerances. in Bildverarbeitung für die Medizin, pp. 122-126, Springer, 2009

@inproceedings{2009-BVM-POLSF,
  author    = {Papenberg, Nils and Olesch, Janine and Lange, Thomas and Schlag, Peter M. and Fischer, Bernd},
  title     = {Landmark Constrained Non-parametric Image Registration with Isotropic Tolerances},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin},
   editor    = {Hans-Peter Meinzer and Thomas Martin Deserno and Heinz Handels and Thomas Tolxdorff},
  year      = {2009},
  Series = {Informatik aktuell},
  pages     = {122-126},
  publisher = {Springer},
}

Ens, Konstantin and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd: Improving a Registration and/or Segmentation Task by Incorporating Characteristics of the Displacement Field. in Proceedings of the SPIE 2009, Medical Imaging, no. 5370, pp. 304-313, SPIE, 2009

@INPROCEEDINGS{2009-SPIE-EHMF,
  	author = {Ens, Konstantin and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd},
 	 title = {Improving a Registration and/or Segmentation Task by Incorporating Characteristics of the Displacement Field},
  	booktitle = {Proceedings of the SPIE 2009, Medical Imaging},
  	year = {2009},
  	editor = {JM Fitzpatrick and M Sonka},
  	volume = {5370},
  	pages = {304--313},
  	publisher = {SPIE},
}

Ruppertshofen, Heike and Kabus, Sven and Fischer, Bernd: Image Registration using Tensor Grids for Lung Ventilation Studies. in Bildverarbeitung für die Medizin 2009, pp. 117 - 121, Springer, 2009

@conference{2009-BVM-RKF,
	Author = {Ruppertshofen, Heike  and Kabus, Sven and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2009},
	Editor = {{H.-P. Meinzer} and T.M. Deserno and H. Handels and T. Tolxdoff},
	Pages = {117 -- 121},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {Image Registration using Tensor Grids for Lung Ventilation Studies},
	Year = {2009}
	DOI={10.1007/978-3-540-93860-6_24},
	ISBN={978-3-540-93859-0},
}

Modersitzki, Jan: FAIR: Flexible Algorithms for Image Registration. SIAM, Philadelphia, 2009

@BOOK{2009-FAIR, 
  title = {{FAIR}: Flexible Algorithms for Image Registration},
  publisher = {SIAM},
  address = {Philadelphia},
  year = {2009},
  author = {Modersitzki, Jan},
}

Heldmann, Stefan and Zidowitz, Stephan: Elastic Registration of Multiphase CT Images of Liver. in SPIE Medical Imaging 2009: Image Processing, no. 7259, SPIE, March, 2009

@conference{2009-SPIE-HZ,
  author = {Heldmann, Stefan and Zidowitz, Stephan},
  title = {Elastic Registration of Multiphase {CT} Images of Liver},
  booktitle={SPIE Medical Imaging 2009: Image Processing},
  volume = {7259},
  year = {2009},
  month={March},
  publisher={SPIE},
  location={Lake Buena Vista, FL, USA },
  DOI={10.1117/12.811415},
}

Ens, Konstantin and Wenzel, Fabian and Young, Stewart and Modersitzki, Jan and Fischer, Bernd: Design of a Synthetic Database for the Validation of Non-linear Registration and Segmentation of MR Brain Images. in Proceedings of the SPIE 2009, Medical Imaging, no. 7259, 725933, SPIE, 2009

@INPROCEEDINGS{2009-SPIE-EWYMF, 
  author = {Ens, Konstantin and  Wenzel, Fabian and Young, Stewart and Modersitzki, Jan and Fischer, Bernd},
  title = {Design of a Synthetic Database for the Validation of Non-linear Registration and Segmentation of {MR} Brain Images},
  booktitle = {Proceedings of the SPIE 2009, Medical Imaging},
  year = {2009},
  Editor = {J.P.W. Pluim and B.M. Dawant},
  Volume = {7259, 725933},
  Newpages = {304--313},
  publisher = {SPIE},
 }

Schumacher, Hanno and Modersitzki, Jan and Fischer, Bernd: Combined Reconstruction and Motion Correction in SPECT Imaging. IEEE Transactions on Nuclear Science, no. 56, pp. 73-80, 2009

@article{2009-ITNS-SMF,
	Author = {Schumacher, Hanno and Modersitzki, Jan and Fischer, Bernd},
	Journal = {IEEE Transactions on Nuclear Science},
	Pages = {73--80},
	Title = {Combined Reconstruction and Motion Correction in {SPECT} Imaging},
	Volume = {56},
	Year = {2009}
}

Hanno Schumacher: Bewegungskorrektur in SPECT-Aufnahmen. 2009

@phdthesis{2009-PhD-Schumacher,
  Author = {Hanno Schumacher},
  Title = {Bewegungskorrektur in SPECT-Aufnahmen},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2009},
}

Pöschel, Christiane and Modersitzki, Jan and Scherzer, Otmar: A Variational Settingfor Volume Constrained Image Registration. February, 2009

@techreport{2009-TR-PMS,
  author = {P\"{o}schel, Christiane and Modersitzki, Jan and Scherzer, Otmar},
  title = {A Variational Settingfor Volume Constrained Image Registration },
  institution = {Joint Research Program of Industrial Geometry}, 
  year = {2009},
  month = {February},
}

Heldmann, Stefan and Papenberg, Nils: A Variational Approach for Volume-to-Slice Registration. in SSVM `09: Proceedings of the Second International Conference on Scale Space and Variational Methods in Computer Vision, no. 5567, pp. 624-635, Springer Berlin/ Heidelberg, 2009

@ARTICLE{2009-SSVM-HP,
  author = {Heldmann, Stefan and Papenberg, Nils},
  title = {A Variational Approach for Volume-to-Slice Registration},
  booktitle= {SSVM '09: Proceedings of the Second International Conference on Scale Space and Variational Methods in Computer Vision},
  Series = {LNCS}
  volume = {5567},
  year = {2009},
  location={Voss, Norway},
  publisher={Springer Berlin/ Heidelberg},
  pages = {624-635},
  DOI={10.1007/978-3-642-02256-2_52},
  ISBN={978-3-642-02255-5},
}

Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan: A Scale-Space Approach to Landmark Constrained Image Registration. in Proceedings of the Second International Conference on Scale Space Methods and Variational Methods in Computer Vision (SSVM), pp. 1-12, Springer LNCS, 2009

@INPROCEEDINGS{2009-SSVM-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {A Scale-Space Approach to Landmark Constrained Image Registration},
  booktitle = {Proceedings of the Second International Conference on Scale Space Methods and  
               Variational Methods in Computer Vision (SSVM)},
  year = {2009},
  pages = {1-12},
  alteditor = {B de Moor and B Motmans},
  publisher = {Springer LNCS},
}

Heldmann, Stefan and Papenberg, Nils: A Scale-Space Approach for Image Registration of Vessel Structures. Bildverarbeitung für die Medizin, pp. 137-141, Springer, 2009

@conference{2009-BVM-HP,
  author = {Heldmann, Stefan and Papenberg, Nils},
  title = {A Scale-Space Approach for Image Registration of Vessel Structures},
  journal = {Bildverarbeitung f\"{u}r die Medizin},
  Series = {Informatik aktuell},
  Xvolume = {7},
  year = {2009},
  publisher={Springer},
  pages = {137-141},
  DOI={10.1007/978-3-540-93860-6_28},
}

Barendt, Sven and Fischer, Bernd and Modersitzki, Jan: A Kernel Representation for Exponential Splines with Global Tension. in Proceedings of the SPIE 2009, Image Processing: Algorithms and Systems VII, San Jose, no. 7245, pp. 72450I, SPIE, 2009

@INPROCEEDINGS{2009-SPIE-BMF, 
  author = {Barendt, Sven and Fischer, Bernd and  Modersitzki, Jan},
  editor = {Jaakko T. Astola and Karen O. Egiazarian and Nasser M. Nasrabadi and Syed A. Rizvi},
  title = {A Kernel Representation for Exponential Splines with Global Tension},
  publisher = {SPIE},
  year = {2009},
  volume = {7245},
  number = {1},
  eid = {72450I},
  numpages = {10},
  pages = {72450I},
  url = {http://link.aip.org/link/?PSI/7245/72450I/1},
  doi = {10.1117/12.810219},   
  note = {Accepted for publication},
  booktitle = {Proceedings of the SPIE 2009, Image Processing: Algorithms and Systems VII, 
  San Jose},
}

Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan: A Framework for Image-Based Constrained Registration with an Application to Local Rigidity. Linear Algebra and its Applications, no. 431, pp. 459-470, 2009

@ARTICLE{2009-LAA-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {A Framework for Image-Based Constrained Registration with an Application to Local Rigidity},
  journal = {Linear Algebra and its Applications},
  volume = {431},
  year = {2009},
  pages = {459-470},
 }

Lange, Thomas and Papenberg, Nils and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd and Schlag, Peter M.: 3D Ultrasound-CT Alignment of the Liver using Combined Landmark-Intensity Registration. International Journal of Computer Assisted Radiology and Surgery, no. 4, pp. 79-88, 2009

@article{LangeEtAl2009,
	Author = {Lange, Thomas and Papenberg, Nils and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd and Schlag, Peter M.},
	Journal = {International Journal of Computer Assisted Radiology and Surgery},
	Number = {1},
	Pages = {79--88},
	Title = {3D Ultrasound--{CT} Alignment of the Liver using Combined Landmark--Intensity Registration},
	Volume = {4},
	Year = {2009}}

2008

Dennis Saering: Segmentierung und Interpolation von 4D-MRT-Bildsequenzen zur Funktionsanalyse des linken Ventrikels. 2008

@phdthesis{2008-PhD-Saering,
  Author = {Dennis Saering},
  Title = {Segmentierung und Interpolation von 4D-MRT-Bildsequenzen zur Funktionsanalyse des linken Ventrikels},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2008},
}

Kabus, Sven and Müller, Florian and Wiemker, Rafael and Fischer, Bernd: Robust Lung Nodule Growth Measurement by Combining Registration and Segmentation. in The First International Workshop on Pulmonary Image Analysis, MICCAI, pp. 15-23, 2008

@conference{2008-MICCAI-KMWB,
	Author = {Kabus, Sven and M{\"u}ller, Florian and Wiemker, Rafael and Fischer, Bernd},
	Booktitle = {The First International Workshop on Pulmonary Image Analysis, MICCAI},
	Editor = {M. Brown and M. de Bruijne and B. van Ginneken and A. Kiraly and J.-M. Kuhnigk and C. Lorenz and K. Mori and J.M. Reinhardt},
	Pages = {15--23},
	Title = {Robust Lung Nodule Growth Measurement by Combining Registration and Segmentation},
	Year = {2008}
}

Papenberg, Nils and Modersitzki, Jan and Fischer, Bernd: Registrierung im Fokus. no. 7, pp. 138-142, Springer Berlin / Heidelberg, 2008

@conference{2008-BVM-PMF,
  author = {Papenberg, Nils and Modersitzki, Jan and Fischer, Bernd},
  title = {{R}egistrierung im {F}okus: {B}eschleunigung {V}ariationeller {M}ethoden f\"{u}r die {B}ildregistrierung},
  book={{B}ildverarbeitung f\"{u}r die {M}edizin},
  Editor = {T. Toldoff and J. Braun and T.M. Deserno and H. Handels and A. Horsch and {H.-P. Meinzer}},
  volume = {7},
  year = {2008},
  publisher={Springer Berlin / Heidelberg},
  pages = {138-142},
  Title = {Registrierung im Fokus},
  Series = {Informatik aktuell},
  DOI={10.1007/978-3-540-78640-5},
  ISSN={1431-472X},
  ISBN={978-3-540-78639-9 (Print), 978-3-540-78640-5 (Online)},
}

Fischer, Bernd and Haber, Eldad and Moderstitzki, Jan: Mathematics Meets Medicine, an Optimal Alignment. SIAG/OPT Views and News, no. 19, pp. 1-7, 2008

@ARTICLE{2008-SIAG-FHM,
  author = {Fischer, Bernd and Haber, Eldad and Moderstitzki, Jan},
  title = {Mathematics Meets Medicine, an Optimal Alignment},
  journal = {SIAG/OPT Views and News},
  volume = {19},
  number={2},
  year = {2008},
  pages = {1-7},
}

Schumacher, Hanno and Heldmann, Stefan and Haber, Eldad and Fischer, Bernd: Iterative Reconstruction of SPECT Images using Adaptive Multil-Level Refinement. in Bildverarbeitung für die Medizin 2008, pp. 318 - 323, Springer, 2008

@inproceedings{2008-BVM-SHHF,
	Author = {Schumacher, Hanno and Heldmann, Stefan and Haber, Eldad and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2008},
	Title = {Iterative Reconstruction of SPECT Images using Adaptive Multil-Level Refinement},
	Year = {2008}}
	Editor = {T. Tolxdoff and J. Braun and T.M. Deserno and H. Handels and A. Horsch and {H.-P. Meinzer}},
	Pages = {318 -- 323},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Year = {2008}
	ISBN={ 978-3-540-78639-9},
}

Papenberg, Nils, and Lange, Thomas and Modersitzki, Jan and Schlag, Peter M. and Fischer, Bernd: Image Registration for CT and Intra-operative Ultrasound Data of the Liver. in Medical Imaging 2008: Image Processing, no. 6918, pp. 1-5, SPIE, 2008

@conference{2008-SPIE-PLMSF,
  author = {Papenberg, Nils, and Lange, Thomas and Modersitzki, Jan and Schlag, Peter M. and Fischer, Bernd},
  title = {Image Registration for {CT} and Intra-operative Ultrasound Data of the Liver},
  Booktitle = {Medical Imaging 2008: Image Processing},
  editor = {MI Miga and KR Cleary},  
  volume = {6918},
  publisher = {SPIE},
  year = {2008},
  pages = {1-5},
  DOI={10.1117/12.770105},
}

Moderstitzki, Jan and Fischer, Bernd: Ill-posed Medicine‚ an Introduction to Image Registration. Inverse Problems, no. 24, pp. 1-19, 2008

@ARTICLE{2008-IP-FM,
  author = {Moderstitzki, Jan and Fischer, Bernd},
  title = {Ill-posed Medicine‚ an Introduction to Image Registration},
  journal = {Inverse Problems},
  volume = {24},
  number={3}
  year = {2008},
  pages = {1-19},
  DOI={10.1088/0266-5611/24/3/034008},
}

Modersitzki, Jan: FLIRT with Rigidity‚Image Registration with a Local Non-rigidity Penalty. International Journal of Computer Vision, pp. 153-163, Springer Netherlands, 2008

@ARTICLE{2007-IJCV-M,
  author = {Modersitzki, Jan},
  title = {FLIRT with Rigidity‚Image Registration with a Local Non-rigidity Penalty},
  journal = {International Journal of Computer Vision},
  Xvolume = {76},
  Xnumber={2},
  year = {2008},
  publisher={Springer Netherlands},
  pages = {153-163},
  DOI={10.1007/s11263-007-0079-3},
  ISSN={0920-5691 (Print) 1573-1405 (Online)},
}

Jan Modersitzki: FAIR - Flexible Algorithms for Image Registration. 2008

@MISC{2008-P-FAIR,
  author =       {Jan Modersitzki},
  title =        {{FAIR} -- {F}lexible {A}lgorithms for {I}mage {R}egistration},
  howpublished = {\newline\url{http://www.mic.uni-luebeck.de/people/jan-modersitzki/software/fair.html}},
  year =         {2008},
}

Nils Papenberg: Ein genereller Registrierungsansatz mit Anwendung in der navigierten Leberchirurgie. 2008

@phdthesis{2008-PhD-Papenberg,
  Author = {Nils Papenberg},
  Title = {Ein genereller Registrierungsansatz mit Anwendung in der navigierten Leberchirurgie},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2008},
}

Ludwig, Martin and Koch, Jochim and Fischer, Bernd: An Application of the Finite Volume Method to the Bio-heat-transfer-equation in Premature Infants. ETNA, no. 28, pp. 136-148, 2008

@article{2008-ETNA-LKF,
	Author = {Ludwig, Martin and Koch, Jochim and Fischer, Bernd},
	Journal = {ETNA},
	Pages = {136--148},
	Title = {An Application of the Finite Volume Method to the Bio-heat-transfer-equation in Premature Infants},
	Volume = {28},
	Year = {2008}
}

Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan: Adaptive Mesh Refinement for Nonparametric Image Registration. SIAM Journal on Scientific Computing, no. 30, pp. 3012-3027, SIAM, 2008

@ARTICLE{2008-SIAM-HHM,
  author = {Haber, Eldad and Heldmann, Stefan and Modersitzki, Jan},
  title = {Adaptive Mesh Refinement for Nonparametric Image Registration},
  journal = {SIAM Journal on Scientific Computing},
  volume = {30},
  number={6},
  year = {2008},
  publisher={SIAM},
  pages = {3012-3027},
  DOI={10.1137/070687724},
  url = {http://link.aip.org/link/?SCE/30/3012},
}

Ens, Konstantin and von Berg, Jens and Kabus, Sven and Lorenz, Cristian and Fischer, Bernd: A Unified Framework for Joint Registration and Segmentation. in Medical Imaging 2008: Image Processing, no. 6914, 691406, 2008

@conference{2008-SPIE-EBKLF,
	Author = {Ens, Konstantin and von Berg, Jens and Kabus,  Sven and Lorenz,  Cristian and Fischer, Bernd},
	Booktitle = {Medical Imaging 2008: Image Processing},
	Editor = {J.P.W. Pluim and J.M. Reinhardt},
	Organization = {SPIE},
	Title = {A Unified Framework for Joint Registration and Segmentation},
	Volume = {6914, 691406},
	Year = {2008}
}

Ens, Konstantin and von Berg, Jens and Bernd, Fischer: A Communication Term for the Combined Registration and Segmentation. in ECIFMBE 2008- IFMBE Proceedings, no. 22, pp. 673-675, IFMBE Proceedings, 2008

@conference{2008-IFMBE-EBF,
	Author = {Ens, Konstantin and von Berg, Jens and Bernd, Fischer},
	Booktitle = {ECIFMBE 2008- IFMBE Proceedings},
	Editor = {J. Vander Sloten and P. Verdonck and M. Nyssen and J. Haueisen},
	Pages = {673--675},
	Publisher = {IFMBE Proceedings},
	Title = {A Communication Term for the Combined Registration and Segmentation},
	Volume = {22},
	Year = {2008}
	DOI={10.1007/978-3-540-89208-3_160},
}

Lange, Thomas and Papenberg, Nils and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd and Schlag, Peter M.: 3D Ultrasound-CT Alignment of the Liver using Combined Landmark-Intensity Registration. in Internationnal Conference on Computer Assisted Radiology and Surgery 2008 (CARS `08), 2008

@inproceedings{2008-CARS-LPHMFLS,
	Author = {Lange, Thomas and Papenberg, Nils and Heldmann, Stefan and Modersitzki, Jan and Fischer, Bernd and Schlag, Peter M.},
	Booktitle = {Internationnal Conference on Computer Assisted Radiology and Surgery 2008 (CARS '08)},
	Title = {{3D Ultrasound--CT Alignment of the Liver using Combined Landmark--Intensity Registration}},
	Year = {2008}}

2007

Schumacher, Hanno and Ens, Konstantin and Franz, Astrid and Fischer, Bernd: Wahl eines gewichteten Distanzmaßes für monomodale Bilder in der nicht- parametrischen Registrierung. in Bildverarbeitung für die Medizin 2007, pp. 146-150, Springer, 2007

@conference{2007-BVM-SEFF,
	Author = {Schumacher, Hanno and Ens, Konstantin and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2007},
	Editor = {A. Horsch and T.M. Deserno and H. Handels and {H.-P. Meinzer} and T. Tolxdoff},
	Pages = {146--150},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {{W}ahl eines gewichteten {D}istanzma&szlig;es f{\"u}r monomodale {B}ilder in der nicht-	parametrischen {R}egistrierung},
	Year = {2007}
	DOI={10.1007/978-3-540-71091-2_30},
	ISBN={978-3-540-71090-5},
}

Kabus,Sven and Franz, Astrid and Fischer, Bernd: Variational Image Registration Allowing for Discontinuities in the Displacement Field. in Image Processing Based on Partial Differential Equations, pp. 363-377, Springer, 2007

@conference{2007-CMA-KFF,
	Author = {Kabus,Sven and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Image Processing Based on Partial Differential Equations},
	Editor = {X.-C. Tai and K.-A. Lie and T.F. Chan and S. Osher},
	Pages = {363--377},
	Publisher = {Springer},
	Series = {Mathematics and Visualization},
	Title = {Variational Image Registration Allowing for Discontinuities in the Displacement Field},
	Year = {2007}
	DOI={10.1007/978-3-540-33267-1_20},
}

Peters, Achim and Conrad, Matthias and Hubold, Christian and Schweiger, Ulrich and Fischer, Bernd and Fehm, Horst Lorenz: The Principle of Homeostasis in the Hypothalamus-Pituitary-Adrenal System: New Insight from Positive Feedback. Am J Physiol Regulatory Integrative Comp Physiol, no. 293, pp. 83-98, 2007

@article{2007-AJPRICP-PCHSFF,
	Author = {Peters, Achim and Conrad, Matthias and Hubold, Christian and Schweiger, Ulrich and Fischer, Bernd and Fehm, Horst Lorenz },
	Journal = {Am J Physiol Regulatory Integrative Comp Physiol},
	Pages = {83-98},
	Title = {The Principle of Homeostasis in the Hypothalamus-Pituitary-Adrenal System: New Insight from Positive Feedback},
	Volume = {293},
	Year = {2007}
	DOI={10.1152/ajpregu.00907.2006 },
}

Kabus, Sven and Franz, Astrid and Fischer, Bernd: Spatially Varying Elasticity in Image Registration. Methods of Information in Medicine, no. 46, pp. 287-291, 2007

@article{2007-MIM-KFF,
	Author = {Kabus, Sven and Franz, Astrid and Fischer, Bernd},
	Journal = {Methods of Information in Medicine},
	Number = {3},
	Pages = {287--291},
	Title = {Spatially Varying Elasticity in Image Registration},
	Volume = {46},
	Year = {2007}
	DOI={10.1160/ME9045},
	ISSN={0026-1270},
}

Haber, Eldad and Modersitzki, Jan: Intensity Gradient Based Registration and Fusion of Multi-modal Images. Methods of Information in Medicine, no. 46, pp. 292-299 publisjerSchattauer Verlag, Stuttgart, 2007

@ARTICLE{2007-MIM-HM, 
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {Intensity Gradient Based Registration and Fusion of Multi-modal Images},
  journal = {Methods of Information in Medicine},
  volume = {46},
  number={3},
  pages = {292--299},
  publisjer{Schattauer Verlag, Stuttgart},
  year = {2007},
}

Ens, Konstantin and Schumacher, Hanno and Franz, Astrid and Fischer, Bernd: Improved Elastic Medical Image Registration Using Mutual Information. in Medical Imaging 2007: Image Processing, no. 6512, 65122C, SPIE, 2007

@conference{2007-SPIE-ESFF,
	Author = {Ens, Konstantin and Schumacher, Hanno and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Medical Imaging 2007: Image Processing},
	Editor = {J.P.W. Pluim and J.M. Reinhardt},
	Location = {San Diego, CA, USA},
	Publisher = {SPIE},
	Title = {Improved Elastic Medical Image Registration Using Mutual Information},
	Volume = {6512, 65122C},
	Year = {2007}
	Url = {http://link.aip.org/link/?PSI/6512/65122C/1},
	Bdsk-Url-1 = {http://link.aip.org/link/?PSI/6512/65122C/1},
	Bdsk-Url-2 = {http://dx.doi.org/10.1117/12.707632}}
}

Modersitzki, Jan: Image Registration with Local Rigidity Constraints. no. 5, pp. 444-448, Springer Berlin/ Heidelberg, 2007

@conference{2007-BVM-M, 
  author = {Modersitzki, Jan},
  title = {Image Registration with Local Rigidity Constraints},
  book={Bildverarbeitung f\"{u}r die Medizin},
  editor= {A. Horsch, TM. Deserno, H. Handels, HP. Meinzer, and T. Tolxdoff},
  volume = {5},
  year = {2007},
  publisher={Springer Berlin/ Heidelberg},
  pages = {444-448},
  DOI={10.1007/978-3-540-71091-2},
  ISSN={1431-472X},
  ISBN={978-3-540-71090-5 (Print), 978-3-540-71091-2 (Online)},
}

Schmitt, Oliver and Modersitzki, Jan and Heldmann, Stefan and Wirtz, Stefen and Fischer, Bernd: Image Registration of Sectioned Brains. International Journal of Computer Vision, no. 73, pp. 5-39, Springer Netherlands, 2007

@ARTICLE{2007-IJCV-SMHWF,
  author = {Schmitt, Oliver and Modersitzki, Jan and Heldmann, Stefan and Wirtz, Stefen and Fischer, Bernd},
  title = {Image Registration of Sectioned Brains },
  journal = {International Journal of Computer Vision },
  volume = {73},
  number={1},
  year = {2007},
  publisher={Springer Netherlands},
  pages = {5-39},
  DOI={10.1007/s11263-006-9780-x},
  ISSN={0920-5691 (Print), 1573-1405 (Online)},
}

Barendt, Sven and Fischer, Bernd and Modersitzki, Jan: Ein numerisches Verfahren zur Kalibrierung von Gammakameras. pp. 449-453, Springer Berlin / Heidelberg, 2007

@conference{2007-BVM-BFM,
  author = {Barendt, Sven and Fischer, Bernd and Modersitzki, Jan},
  title = {{E}in numerisches {V}erfahren zur {K}alibrierung von {G}ammakameras},
  book = {{B}ildverarbeitung f\"{u}r die {M}edizin 2007},
  Editor = {A. Horsch and T.M. Deserno and H. Handels and {H.-P. Meinzer} and T. Tolxdoff},
  year = {2007},
  publisher={Springer Berlin / Heidelberg},
  pages = {449-453},
  Series = {Informatik aktuell},
  DOI = {10.1007/978-3-540-71091-2},
  ISSN={1431-472X},
  ISBN={978-3-540-71090-5(Print), 978-3-540-71091-2 (Online)},
}

Schumacher, Hanno and Modersitzki, Jan and Fischer, Bernd: Combined Reconstruction and Motion Correction in SPECT Imaging. 2007

@TECHREPORT{2007-TR-SMF,
  author = {Schumacher, Hanno and Modersitzki, Jan and  Fischer, Bernd},
  title = {Combined Reconstruction and Motion Correction in {SPECT} Imaging},
  institution = {Institute of Mathematics, University of L\"ubeck, Germany},
  year = {2007},
  type = {Preprint A-07-04},
  note = {Accepted for publication in the SPIE Proceedings on Medical Imaging},
}

Haber, Eldad and Modersitzki, Jan: Cofir: Coarse and Fine Image Registration. SIAM Real-Time PDE-Constrained Optimization, pp. 37-49, SIAM, Philadelphia, 2007

@ARTICLE{2007-SIAM-HM, 
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {Cofir: Coarse and Fine Image Registration },
  journal = {SIAM Real-Time PDE-Constrained Optimization},
  editor = {LT Biegler and O Ghattas and M Heinkenschloss and D Keyes and B van Bloemen Waanders},
  year = {2007},
  publisher={SIAM, Philadelphia},
  pages = {37-49},
}

Röhl, Elisabeth and Schumacher, Hanno and Fischer, Bernd: Automatic Detection of Abrupt Patient Motion in SPECT Data Acquisition. in Medical Imaging 2007: Image Processing, no. 6512, 65120C, SPIE, 2007

@conference{2007-SPIE-RSF,
	Author = {R{\"o}hl, Elisabeth and Schumacher, Hanno and Fischer, Bernd},
	Booktitle = {Medical Imaging 2007: Image Processing},
	Editor = {J.P.W. Pluim and J.M. Reinhardt},
	Publisher = {SPIE},
	Title = {Automatic Detection of Abrupt Patient Motion in {SPECT} Data Acquisition},
	Volume = {6512, 65120C},
	Year = {2007}
}

Haber, Eldad and Heldmann, Stefan: An OcTree Multigrid Method for Quasi-Static Maxwell’s Equations with Highly Discontinuous Coefficients. Journal of Computational Physics, pp. 783-796, Elsevier Inc, 2007

@ARTICLE{2007-JCP-HH,
  author = {Haber, Eldad and Heldmann, Stefan},
  title = {An OcTree Multigrid Method for Quasi-Static Maxwell’s Equations with Highly
  Discontinuous Coefficients },
  journal = {Journal of Computational Physics},
  Xvolume = {223},
  Xnumber = {2},
  year = {2007},
  publisher={Elsevier Inc},
  pages = {783-796},
  DOI={10.1016/j.jcp.2006.10.012 },
 }

Haber, Eldad and Heldmann, Stefen and Modersitzki, Jan: An OcTree Method for Parametric Image Registration. SIAM Journal on Scientific Computing, no. 29, pp. 2008-2023, SIAM, 2007

@ARTICLE{2007-SIAM-HHM,
  author = {Haber, Eldad and Heldmann, Stefen and Modersitzki, Jan },
  title = {An OcTree Method for Parametric Image Registration },
  journal = {SIAM Journal on Scientific Computing},
  volume = {29},
  number={5},
  year = {2007},
  publisher={SIAM},
  pages = {2008-2023},
  DOI={10.1137/060662605},
  url = {http://link.aip.org/link/?SCE/29/2008/1},
}

Haber, Eldad and Heldmann, Stefan and Ascher, Uri: Adaptive Finite Volume Method for Distributed Non-smooth Parameter Identification. Inverse Problems, pp. 1659-1676, 2007

@ARTICLE{2007-IP-HHA,
  author = {Haber, Eldad and Heldmann, Stefan and Ascher, Uri},
  title = {Adaptive Finite Volume Method for Distributed Non-smooth Parameter Identification},
  journal = {Inverse Problems},
  Xvolume = {23},
  Xnumber = {4},
  year = {2007},
  pages = {1659-1676},
  DOI={10.1088/0266-5611/23/4/017},
}

Schumacher, Hanno and Fischer, Bernd: A New Flexible Reconstruction Framework for Motion Correction in SPECT Imaging. IEEE Transactions on Nuclear Science, no. 54, pp. 480-485, 2007

@article{2007-ITNS-SF,
	Author = {Schumacher, Hanno and Fischer, Bernd},
	Journal = {IEEE Transactions on Nuclear Science},
	Pages = {480-485},
	Title = {A New Flexible Reconstruction Framework for Motion Correction in {SPECT} Imaging},
	Volume = {54},
	Year = {2007}
	DOI={10.1109/TNS.2007.896211 },
	ISSN={0018-9499 },
}

Schumacher, Hanno and Fischer, Bernd: A new Approach for Motion Correction in SPECT Imaging. in Bildverarbeitung für die Medizin 2007, pp. 51-55, Springer, 2007

@conference{2007-BVM-SF,
	Author = {Schumacher, Hanno and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2007},
	Editor = {A. Horsch and T.M. Deserno and H. Handels and {H.-P. Meinzer} and T. Tolxdoff},
	Pages = {51-55},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {A new Approach for Motion Correction in {SPECT} Imaging},
	Year = {2007}
	DOI={10.1007/978-3-540-71091-2_11},
	ISBN={978-3-540-71090-5},
}

Papenberg, Nils and Schumacher, Hanno and Heldmann, Stefan and Wirtz, Stefan and Bommersheim, Silke and Ens, Konstantin and Modersitzki, Jan and Fischer, Bernd: A Fast and Flexible Image Registration Toolbox: Design and Implementation of the General Approach. no. 5, pp. 106-110, Springer Berlin/ Heidelberg, 2007

@conference{2007-BVM-FLIRT,
  author = {Papenberg, Nils and Schumacher, Hanno and Heldmann, Stefan and Wirtz, Stefan and Bommersheim, Silke and Ens, Konstantin and Modersitzki, Jan and Fischer, Bernd},
  title = {A Fast and Flexible Image Registration Toolbox: Design and Implementation of the General Approach},
  book= {Bildverarbeitung f\"{u}r die Medizin 2007},
  Series = {Informatik aktuell},
  Editor = {A. Horsch and T.M. Deserno and H. Handels and {H.-P. Meinzer} and T. Tolxdoff},
  volume = {5},
  year = {2007},
  publisher={Springer Berlin/ Heidelberg},
  pages = {106-110},
  DOI={10.1007/978-3-540-71091-2},
  ISSN={1431-472X},
  ISBN={978-3-540-71090-5 (Print), 978-3-540-71091-2 (Online)},
}

2006

Schumacher, Hanno and Franz, Astrid and Fischer, Bernd: Weighted Medical Image Registration with Automatic Mask Generation. in Medical Imaging 2006: Image Processing, no. 6144, 61442B, SPIE, 2006

@inproceedings{2006-SPIE-SFF,
	Author = {Schumacher, Hanno and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Medical Imaging 2006: Image Processing},
	Editor = {J.M. Reinhardt, J.P.W. Pluim},
	Publisher = {SPIE},
	Title = {Weighted Medical Image Registration with Automatic Mask Generation},
	Volume = {6144, 61442B},
	Year = {2006}
	DOI={10.1117/12.651323},
}

Albiez, J. and Giesler, B. and Lellmann, J. and Zöllner, J. M. and Dillmann, R.: Virtual Immersion for Tele-Controlling a Hexapod Robot (Awarded Industrial Highly Commended Award). in Climbing and Walking Robots, pp. 1087-1094, 2006

@InProceedings, 
  title={Virtual Immersion for Tele-Controlling a Hexapod Robot (Awarded Industrial Highly Commended Award)},
  booktitle={Climbing and Walking Robots},
  year={2006},
  pages={1087--1094},
  doi={10.1007/3-540-26415-9_130},
  author={Albiez, J. and Giesler, B. and Lellmann, J. and Zöllner, J. M. and Dillmann, R.},
  owner={Jan},
  quality={1},
  timestamp={2013.01.14},
  url={dx.doi.org/10.1007/3-540-26415-9_130}
}

Kabus, Sven and Franz, Astrid and Fischer, Bernd: Variational Image Registration with Local Properties. in Biomedical Image Registration (WBIR 2006), pp. 92-100, Springer, 2006

@conference{2006-WBIR-KFF,
	Author = {Kabus, Sven and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Biomedical Image Registration (WBIR 2006)},
	Editor = {J.P.W. Pluim and B. Likar and F.A. Gerritsen},
	Pages = {92--100},
	Publisher = {Springer},
	Series = {LNCS 4057},
	Title = {Variational Image Registration with Local Properties},
	Year = {2006}
	DOI={10.1007/11784012_12},
	ISBN={3-540-35648-7},
}

Schmitt, Oliver and Modersitzki, Jan and Wirtz, Stefen: Registration of Histological Serial Sectionings. no. 10, pp. 63-80, Springer Berlin / Heidelberg, 2006

@ARTICLE{2006-MMRAMI-MSW,
  author = {Schmitt, Oliver and Modersitzki, Jan and Wirtz, Stefen},
  title = {Registration of Histological Serial Sectionings},
  book={Mathematical Models for Registration and Applications to Medical Imaging},
  volume = {10},
  year = {2006},
  publisher={Springer Berlin / Heidelberg},
  pages = {63-80},
  DOI={10.1007/978-3-540-34767-5},
  ISSN={1612-3956},
  ISBN={978-3-540-25029-6 (Print), 978-3-540-34767-5 (Online)},
}

Modersitzki, Jan and Wirtz, Stefan: Registration of Histological Serial Sectionings. in Mathematical Models for Registration and Applications to Medical Imaging. Mathematics in Industry, Springer, New York, 2006

@inproceedings{2006-MMRAMI-WM,
    author = {Modersitzki, Jan and Wirtz, Stefan},
     title = {Registration of Histological Serial Sectionings},
    editor = {Otmar Scherzer},
  booktitle = {Mathematical Models for Registration and Applications
               to Medical Imaging. Mathematics in Industry},
      year = {2006},
 publisher = {Springer},
   address = {New York},
}

Bommersheim, Silke and Fischer, Bernd: Non-rigid Image Registration. in Proceedings of the 9th Korea-Germany joint workshop on Advanced Medical Image Processing, pp. 81-89, Seoul, 2006

@inproceedings{2006-KOREA-BF, 
	Address = {Seoul},
	Author = {Bommersheim, Silke and Fischer, Bernd},
	Booktitle = {Proceedings of the 9th Korea-Germany joint workshop on Advanced Medical Image Processing},
	Pages = {81--89},
	Title = {Non-rigid Image Registration},
	Year = {2006}
}

Heldmann, Stefan: Non-Linear Registration based on Mutual Information. 2006

@phdthesis{2006-PhD-Heldmann,
	Author = {Heldmann, Stefan},
	School = {Institute of Mathematics, University of L\"ubeck},
	Title = {Non-Linear Registration based on Mutual Information},
	ISBN= {978-3-8325-1481-5},
	Year = {2006},
}

Sven Kabus: Multiple-Material Variational Image Registration. 2006

@phdthesis{2006-PhD-Kabus,
  Author = {Sven Kabus},
  Title = {Multiple-Material Variational Image Registration},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2006},
}

Matthias Conrad: Modellierung und Parameterschätzung endokriner Systeme. 2006

@phdthesis{2006-PhD-Conrad,
  Author = {Matthias Conrad},
  Title = {Modellierung und Parametersch\"atzung endokriner Systeme},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2006},
}

Bommersheim,Silke and Fischer, Bernd: Mathematik und Medizin - die Fusion zweier Welten. FOCUS MUL, no. 23, pp. 196-201, 2006

@article{2006-FOCUS-BF,
	Author = {Bommersheim,Silke and Fischer, Bernd},
	Journal = {FOCUS MUL},
	Number = {4},
	Pages = {196--201},
	Title = {{M}athematik und {M}edizin -- die {F}usion zweier {W}elten},
	Volume = {23},
	Year = {2006}
}

Haber, Eldad and Modersitzki, Jan: Intensity Gradient Based Registration and Fusion of Multi-modal Images. in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2006, no. 3216, pp. 591-598, Springer LNCS, 2006

@INPROCEEDINGS{2006-MICCAI-HM,
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {Intensity Gradient Based Registration and Fusion of Multi-modal Images},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention -- MICCAI
	2006},
  year = {2006},
  editor = {C Barillot and DR Haynor and P Hellier},
  volume = {3216},
  pages = {591--598},
  publisher = {Springer LNCS}
}

Haber, Eldad and Modersitzki, Jan: Image Registration with Guaranteed Displacement Regularity. International Journal of Computer Vision, no. 71, pp. 361-372, Springer Netherlands, 2006

@ARTICLE{2006-IJCV-HM,
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {Image Registration with Guaranteed Displacement Regularity},
  journal = {International Journal of Computer Vision},
  volume = {71},
  number={3},
  year = {2006},
  publisher={Springer Netherlands},
  pages = {361-372},
  DOI={10.1007/s11263-006-8984-4},
  ISSN={0920-5691 (Print), 1573-1405 (Online)},
}

Fischer, Bernd and Modersitzki, Jan: Image Fusion and Registration - a Variational Approach. in Computational Science and High Performance Computing II, no. 91, pp. 193-205, Springer, 2006

@INPROCEEDINGS{2006-CSHPC-FM,
  author = {Fischer, Bernd and Modersitzki, Jan},
  title = {Image Fusion and Registration -- a Variational Approach},
  booktitle = {Computational Science and High Performance Computing II},
  Volume = {91},
  year = {2006},
  editor = {E Krause and YI Shokin and M Resch and N Shokina},
  series = {Notes on Numerical Fluid Mechanics and Multidisciplinatory Design, 91},
  pages = {193--205},
  publisher = {Springer},
}

SAFIR research group: FLIRT - A FLexible Image Registration Toolbox. 2006

@MISC{2006-P-FLIRT,
  author =       {SAFIR research group},
  title =        {{FLIRT} -- A {FL}exible {I}mage {R}egistration {T}oolbox},
  howpublished = {\newline\url{http://www.math.uni-luebeck.de/safir/FLIRT-Download/index.shtml}},
  year =         {2006},
}

Koch, Joachim and Ludwig, Martin and Fischer, Bernd: Der Wärmehaushalt des Frühgeborenen: Mathematische Modellierung und numerische Ergebnisse. FOCUS MUL, no. 23, pp. 16-24, 2006

@article{2006-FOCUS-KLF,
	Author = {Koch, Joachim and Ludwig, Martin and Fischer, Bernd},
	Journal = {FOCUS MUL},
	Number = {1},
	Pages = {16--24},
	Title = {Der {W}{\"a}rmehaushalt des {F}r{\"u}hgeborenen: {M}athematische {M}odellierung und numerische {E}rgebnisse},
	Volume = {23},
	Year = {2006}
}

Modersitzki, Jan and Wirtz, Stefen: Combining Homogenization and Registration. no. 4057, pp. 257-263, Springer Berlin/ Heidelberg, 2006

@ARTICLE{2006-BMI-MW,
  author = {Modersitzki, Jan and Wirtz, Stefen},
  title = {Combining Homogenization and Registration  },
  bbok = {Biomedical Image Registration},
  volume = {4057},
  year = {2006},
  publisher={Springer Berlin/ Heidelberg},
  pages = {257-263},
  DOI={10.1007/11784012},
  ISSN={0302-9743 (Print), 1611-3349 (Online)},
  ISBN={978-3-540-35648-6},
}

Haber, Eldad and Modersitzki, Jan: A Multilevel Method for Image Registration. SIAM Journal on Scientific Computing, no. 27, pp. 1594-1607, SIAM, 2006

@ARTICLE{2006-SIAM-HM,  
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {A Multilevel Method for Image Registration},
  journal = {SIAM Journal on Scientific Computing},
  volume = {27},
  number={5},
  year = {2006},
  publisher={SIAM},
  pages = {1594-1607},
}

Lars Hömke: A multigrid method for elastic image registration with additional structural constraints. 2006

@phdthesis{2006-PhD-Hoemke,
  Author = {Lars H\"omke},
  Title = {A multigrid method for elastic image registration with additional structural constraints},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2006},
}

2005

Schmitt, Oliver and Eggers, Reinhard and Modersitzki, Jan: Videomicroscopy, Image Processing, and Analysis of Whole Histologic Sections of the Human Brain. Microscopy Research and Technique, no. Volume 66 Issue 4, pp. 203-218, Wiley- Liss, 2005

@ARTICLE{2005-MRT-SEM, 
  author = {Schmitt, Oliver and Eggers, Reinhard and Modersitzki, Jan},
  title = {Videomicroscopy, Image Processing, and Analysis of Whole Histologic Sections of the Human Brain },
  journal = {Microscopy Research and Technique},
  volume = {Volume 66 Issue 4},
  year = {2005},
  publisher={Wiley- Liss},
  pages = {203-218},
  }

Schmitt, Oliver and Modersitzki, Jan and Heldmann, Stefan and Wirtz, Stefen and Hömke, L and Heide, W and Kömpf, D and Wree, A: Three-dimensional Cytoarchitectonic Analysis of the Posterior Bank of the Human Precentral sulcus. Anatomy and Embryology, no. Volume 210, Numbers 5-6, pp. 387-400, Springer Berlin / Heidelberg, 2005

@ARTICLE{2005-AE-SMHWHHKW,
  author = {Schmitt, Oliver and Modersitzki, Jan and Heldmann, Stefan and Wirtz, Stefen and H\"{o}mke, L and Heide, W and K\"{o}mpf, D and Wree, A },
  title = {Three-dimensional Cytoarchitectonic Analysis of the Posterior Bank of the Human Precentral sulcus},
  journal = {Anatomy and Embryology},
  volume = {Volume 210, Numbers 5-6},
  year = {2005},
  publisher={Springer Berlin / Heidelberg},
  pages = {387-400},
  DOI={10.1007/s00429-005-0030-8},
  ISSN={0340-2061 (Print), 1432-0568 (Online)},
}

Wirtz, Stefan and Papenberg, Nils and Fischer, Bernd and Schmitt, Oliver: Robust and Staining-Invariant Elastic Registration of a Series of Images from Histologic Slices. in Medical Imaging 2005: Image Processing, no. 5747, pp. 1256-1262, SPIE, 2005

@inproceedings{2005-SPIE-WPFS,
	Author = {Wirtz, Stefan and Papenberg, Nils and Fischer, Bernd and Schmitt, Oliver},
	Booktitle = {Medical Imaging 2005: Image Processing},
	Editor = {J.M. Fitzpatrick and J.M. Reinhardt},
	Pages = {1256--1262},
	Publisher = {SPIE},
	Title = {Robust and Staining-Invariant Elastic Registration of a Series of Images from Histologic Slices},
	Volume = {5747},
	Year = {2005}
}

Bolten, Matthias and Papenberg, Nils and Fischer, Bernd and Adamidis, Panagiotis and Rabenseifner, Rolf and Berger, Holger: Parallelisierung eines Nichtlinearen Registrierungsalgorithmus zur Verarbeitung sehr großer Volumen-Daten. in Bildverarbeitung für die Medizin 2005, pp. 360-364, Springer, 2005

@inproceedings{2005-BVM-BPFARB,
	Author = {Bolten, Matthias and Papenberg, Nils and Fischer, Bernd and Adamidis, Panagiotis and Rabenseifner, Rolf and Berger, Holger},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2005},
	Editor = {H.-P. Meinzer and H. Handels and A. Horsch and T. Tolxdorff},
	Pages = {360--364},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {{P}arallelisierung eines {N}ichtlinearen {R}egistrierungsalgorithmus zur {V}erarbeitung sehr gro&szlig;er {V}olumen-{D}aten},
	Year = {2005}
}

Kabus, Sven and Franz, Astrid and Fischer, Bernd: On Elastic Image Registration with Varying Material Parameters. in Bildverarbeitung für die Medizin 2005, pp. 330-334, Springer, 2005

@conference{2005-BVM-KFF,
	Author = {Kabus, Sven and Franz, Astrid and Fischer, Bernd},
	Booktitle = {Bildverarbeitung f{\"u}r die Medizin 2005},
	Editor = {H.-P. Meinzer and H. Handels and A. Horsch and T. Tolxdorff},
	Pages = {330--334},
	Publisher = {Springer},
	Series = {Informatik aktuell},
	Title = {On Elastic Image Registration with Varying Material Parameters},
	Year = {2005}
}

Hofmann, Ulrich and Knopp, Ulrich and Fischer, Bernd and Modersitzki, Jan: Navigationshilfsvorrichtung für Neurochirurgische Eingriffe am Menschlichen Gehirn. Feb., 2005

@MANUAL{2005-P-NAVI,
  TITLE =        {{N}avigationshilfsvorrichtung f\"{u}r {N}eurochirurgische {E}ingriffe am {M}enschlichen Gehirn},
  author =       {Hofmann, Ulrich and Knopp, Ulrich and Fischer, Bernd and Modersitzki, Jan},
  organization = {Deutsches  Patentamt},
  Howpublished = {DE 10242802.6},
  note =         {AZ 10242 802},
  year = {2005},
  month = {Feb.},
}

Martin Ludwig: Ein Finite-Volumen-Verfahren zur numerischen Simulation der Temperaturverteilungen in Frühgeborenen. 2005

@phdthesis{2005-PhD-Ludwig,
  Author = {Martin Ludwig},
  Title = {Ein Finite-Volumen-Verfahren zur numerischen Simulation der Temperaturverteilungen in Fr\"uhgeborenen},
  School = {Institute of Mathematics, University of L\"ubeck},
  Year = {2005},
}

Faber, Tracy and Modersitzki, Jan and Folks, Russell and Garcia, Ernest: Detecting Changes in Serial Myocardial Perfusion SPECT: A Simulation Study. Journal of Nuclear Cardiology, no. 12, pp. 302-310, 2005

@ARTICLE{2005-JNC-FMFG,
  author = {Faber, Tracy and Modersitzki, Jan and Folks, Russell and Garcia, Ernest},
  title = {Detecting Changes in Serial Myocardial Perfusion SPECT: A Simulation Study},
  journal = {Journal of Nuclear Cardiology},
  volume = {12},
  number={3},
  year = {2005},
  publisher={},
  pages = {302-310},
  DOI={10.1016/j.nuclcard.2004.12.299},
}

Haber, Eldad and Modersitzki, Jan: Beyond Mutual Information: A Simple and Robust Alternative. pp. 350-354, Springer Berlin/ Heidelberg, 2005

@conference{2005-BVM-HM,
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {Beyond Mutual Information: A Simple and Robust Alternative},
  book={Bildverarbeitung f\"{u}r die Medizin 2005},
  editor = {HP Meinzer and H Handels and A Horsch and T Tolxdorff},
  year = {2005},
  publisher={Springer Berlin/ Heidelberg},
  pages = {350-354},
  DOI={10.1007/b137570},
  ISSN={1431-472X},
  ISBN={978-3-540-25052-4 (Print), 978-3-540-26431-6 (Online)},
}

Haber, Eldad and Modersitzki, Jan: A Scale Space Method for Volume Preserving Image Registration. no. Volume 3459, pp. 561-572, Spriger Berlin /Heidelberg, 2005

@ARTICLE{2005-SSPMSV-HM, 
  author = {Haber, Eldad and Modersitzki, Jan},
  title = {A Scale Space Method for Volume Preserving  Image Registration  },
  book={Scale Space and PDE Methods in Computer Vision},
  volume = {Volume 3459},
  year = {2005},
  publisher={Spriger Berlin /Heidelberg},
  pages = {561-572},
  DOI={10.1007/b107185},
  ISSN={0302-9743 (Print), 1611-3349 (Online)},
  ISBN={978-3-540-25547-5},
}

@Inproceedings{2014-BVM-HRMB,
	Author = {Heck, Constantin and Ruthotto, Lars and Modersitzki, Jan and Berkels, Benjamin},
booktitle = {BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Date-Added = {2014-01-22 13:52:07 +0000},
	Date-Modified = {2014-01-22 13:54:28 +0000},
	Title = {Model-based parameter estimation in DCE-MRI without an Arterial Input Function}
pages = {246--251}}

@Inproceedings{2014-BVM-HRMB,
	Author={Heck, Constantin and Ruthotto, Lars and Modersitzki, Jan and Berkels, Benjamin},
booktitle={BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Date-Added={2014-01-22 13:52:07 +0000},
	Date-Modified={2014-01-22 13:54:28 +0000},
	Title={Model-based parameter estimation in DCE-MRI without an Arterial Input Function}
pages={246--251}}

@inproceedings{2014-BVM-TBM,
	Author = {Trull, Anna Katharina and Berkels, Benjamin and Modersitzki, Jan },
Booktitle = {BVM 2014, Bildverarbeitung f{\"u}r die Medizin 2014},
	Title = {Glomerular Filtration Rate Estimation from Dynamic Contrast-Enhanced MRI using a Separable Compartment Model and Parameter Elimination}
pages = {30--35}}

Peshko, Olesya and Modersitzki , Jan and Terlaky, Terlaky and Menard, C and Craig, T. and Moseley, Douglas: Automatic localization and tracking of fiducial markers for organ motion analysis in image-guided radiation therapy. pp. 1-4, Proceedings of the SPIE 2010, Medical Imaging,

@INPROCEEDINGS{2009-SPIE-PMTMCM,
  author = {Peshko, Olesya and Modersitzki , Jan and Terlaky, Terlaky and Menard, C and Craig, T. and Moseley, Douglas},
  title = {Automatic localization and tracking of fiducial markers for organ motion analysis in image-guided radiation therapy},
  publisher = { Proceedings of the SPIE 2010, Medical Imaging}, 
  note = {(Submitted)},
  pages = {1--4}, 
}