2022

Florian Mannel,
On the convergence of Broyden’s method and some accelerated schemes for singular problems, pp. 1--29, 2022.
DOI:10.1093/imanum/drab096
Bibtex: BibTeX
@Article{Mannel2,
Author={{Mannel, Florian}},
Title={{On the convergence of Broyden’s method and some accelerated schemes for singular problems}},
FJournal={{IMA Journal of Numerical Analysis}},
Volume={},
Number={},
Pages={1--29},
Year={2022},
Language={English},
DOI= 10.1093/imanum/drab096},
eprint={https://academic.oup.com/imajna/advance-article-pdf/doi/10.1093/imanum/drab096/42198372/drab096.pdf},
}
Florian Mannel, and Armin Rund,
A hybrid semismooth quasi-Newton method for structured nonsmooth operator equations in Banach spaces, JoCA , vol. 29, no. 1, pp. 183--204, 2022.
File: jca29011.htm
Bibtex: BibTeX
@Article{Mannel3,
Author={{Mannel, Florian and Rund, Armin}},
Title={{A hybrid semismooth quasi-Newton method for structured nonsmooth operator equations in Banach spaces}},
FJournal={{Journal of Convex Analysis}},
Journal={{JoCA}},
Volume={29},
Number={1},
Pages={183--204},
Year={2022},
Language={English},
url={https://www.heldermann.de/JCA/JCA29/JCA291/jca29011.htm},
}
Zaccharie Ramzi, Florian Mannel, Shaojie Bai, Jean-Luc Starck, Philippe Ciuciu, and Thomas Moreau,
SHINE: SHaring the INverse Estimate from the forward pass for bi-level optimization and implicit models, 2022.
File: forum
Bibtex: BibTeX
@Article{Mannel5,
title={{SHINE}: {SH}aring the {IN}verse Estimate from the forward pass for bi-level optimization and implicit models},
author={Ramzi, Zaccharie and Mannel, Florian and Bai, Shaojie and Starck, Jean-Luc and Ciuciu, Philippe and Moreau, Thomas},
FJournal={The Tenth International Conference on Learning Representations (ICLR)},
year={2022},
Language={English},
url={https://openreview.net/forum?id=-ApAkox5mp}
}
Sonja Jäckle, Rieke Alpers, Lisa Kühne, Jakob Schumacher, Benjamin Geisler, and Max Westphal,
EsteR -A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities, in German Medical Data Sciences 2022--Future Medicine: More Precise, More Integrative, More Sustainable! , IOS Press, 2022, pp. 17--24.
Bibtex: BibTeX
@incollection{jackle2022ester,
  title={EsteR--A Digital Toolkit for COVID-19 Decision Support in Local Health Authorities},
  author={J{\"a}ckle, Sonja and Alpers, Rieke and K{\"u}hne, Lisa and Schumacher, Jakob and Geisler, Benjamin and Westphal, Max},
  booktitle={German Medical Data Sciences 2022--Future Medicine: More Precise, More Integrative, More Sustainable!},
  pages={17--24},
  year={2022},
  publisher={IOS Press}
}
Danielle Bednarski, and Jan Lellmann,
Inverse Scale Space Iterations for Non-Convex Variational Problems: The Continuous and Discrete Case, J Math Imaging Vis , 2022.
DOI:10.1007/s10851-022-01125-8
File: s10851-022-01125-8
Bibtex: BibTeX
@Article{bednarski2022inverse,
  author  = {Danielle Bednarski and Jan Lellmann},
  title   = {Inverse Scale Space Iterations for Non-Convex Variational Problems: The Continuous and Discrete Case},
  journal = {J Math Imaging Vis},
  year    = {2022},
  doi     = {10.1007/s10851-022-01125-8},
  url = {https://link.springer.com/article/10.1007/s10851-022-01125-8},
}
Frederic Kanter, and Jan Lellmann,
A Flexible Meta Learning Model for Image Registration, in Proceedings of The 5th International Conference on Medical Imaging with Deep Learning , Konukoglu, Ender and Menze, Bjoern and Venkataraman, Archana and Baumgartner, Christian and Dou, Qi and Albarqouni, Shadi, Eds. PMLR, Jul.2022. pp. 638-652.
Bibtex: BibTeX
@InProceedings{pmlr-v172-kanter22a,
title = {A Flexible Meta Learning Model for Image Registration},
author = {Kanter, Frederic and Lellmann, Jan},
booktitle = {Proceedings of The 5th International Conference on Medical Imaging with Deep Learning},
pages = {638-652},
year = {2022},
editor = {Konukoglu, Ender and Menze, Bjoern and Venkataraman, Archana and Baumgartner, Christian and Dou, Qi and Albarqouni, Shadi},  
volume =  {172},  
series =  {Proceedings of Machine Learning Research},  
month =  {06--08 Jul},  
publisher = {PMLR}
}
AD Hering,
Deep-Learning-based Image Registration and Tumor Follow-up Analysis, 2022.
File: Hering__Deep-Learning-based_Image_Registration_and_Tumor_Follow-up_Analysis-komprimiert.pdf
Bibtex: BibTeX
@phdthesis{hering2022deep,
  title={Deep-Learning-based Image Registration and Tumor Follow-Up Analysis},
  author={Hering, AD},
  year={2022},
  school={[Sl]:[Sn]}
}
Till Nicke, Laura Graf, Mikko Lauri, Sven Mischkewitz, Simone Frintrop, and Mattias P Heinrich,
Realtime optical flow estimation on vein and artery ultrasound sequences based on knowledge-distillation, in International Workshop on Biomedical Image Registration , Jul.2022. pp. 134—143.
DOI:10.1007/978-3-031-11203-4_15
Bibtex: BibTeX
@inproceedings{nicke2022realtime,
  title={Realtime optical flow estimation on vein and artery ultrasound sequences based on knowledge-distillation},
  author={Nicke, Till and Graf, Laura and Lauri, Mikko and Mischkewitz, Sven and Frintrop, Simone and Heinrich, Mattias P},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={134--143},
  year={2022},
  organization={Springer}
}
Alessa Hering, Lasse Hansen, Tony CW Mok, Albert CS Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, and Tanja Loßau,
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning, IEEE Transactions on Medical Imaging , vol. 42, no. 3, pp. 697—712, 2022. IEEE.
Bibtex: BibTeX
@article{hering2022learn2reg,
  title={Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning},
  author={Hering, Alessa and Hansen, Lasse and Mok, Tony CW and Chung, Albert CS and Siebert, Hanna and H{\"a}ger, Stephanie and Lange, Annkristin and Kuckertz, Sven and Heldmann, Stefan and Shao, Wei and others},
  journal={IEEE Transactions on Medical Imaging},
  volume={42},
  number={3},
  pages={697--712},
  year={2022},
  publisher={IEEE}
}
Marcus Barann, Stefan Heldmann, Jan Klein, and Stefan Krass,
A Python SDK for Authoring and using Computer-interpretable Guidelines., in BIOINFORMATICS , 2022. pp. 99—106.
Bibtex: BibTeX
@inproceedings{barann2022python,
  title={A Python SDK for Authoring and using Computer-interpretable Guidelines.},
  author={Barann, Marcus and Heldmann, Stefan and Klein, Jan and Kra{\ss}, Stefan},
  booktitle={BIOINFORMATICS},
  pages={99--106},
  year={2022}
}
Andreas Fuchs, Joachim Georgii, Elham Taghizadeh, Stefan Heldmann, Thomas Lange, Sebastian F Bendak, Markus Siegel, Tayfun Yilmaz, Hagen Schmal, and Kaywan Izadpanah,
In-vivo assessment of meniscal movement in the knee joint during internal and external rotation under load, Journal of experimental orthopaedics , vol. 9, no. 1, pp. 102, 2022. Springer.
Bibtex: BibTeX
@article{fuchs2022vivo,
  title={In-vivo assessment of meniscal movement in the knee joint during internal and external rotation under load},
  author={Fuchs, Andreas and Georgii, Joachim and Taghizadeh, Elham and Heldmann, Stefan and Lange, Thomas and Bendak, Sebastian F and Siegel, Markus and Yilmaz, Tayfun and Schmal, Hagen and Izadpanah, Kaywan},
  journal={Journal of experimental orthopaedics},
  volume={9},
  number={1},
  pages={102},
  year={2022},
  publisher={Springer}
}
Sven Kuckertz, Jan Klein, Christiane Engel, Benjamin Geisler, Stefan Krass, and Stefan Heldmann,
Fully automated longitudinal tracking and in-depth analysis of the entire tumor burden: unlocking the complexity, in Medical Imaging 2022: Computer-Aided Diagnosis , 2022. pp. 469—473.
Bibtex: BibTeX
@inproceedings{kuckertz2022fully,
  title={Fully automated longitudinal tracking and in-depth analysis of the entire tumor burden: unlocking the complexity},
  author={Kuckertz, Sven and Klein, Jan and Engel, Christiane and Geisler, Benjamin and Kra{\ss}, Stefan and Heldmann, Stefan},
  booktitle={Medical Imaging 2022: Computer-Aided Diagnosis},
  volume={12033},
  pages={469--473},
  year={2022},
  organization={SPIE}
}
Claudia E Weber, Julia Krämer, Matthias Wittayer, Johannes Gregori, Sigurd Randoll, Florian Weiler, Stefan Heldmann, Christina Roßmanith, Michael Platten, Achim Gass, and Tanja Loßau,
Association of iron rim lesions with brain and cervical cord volume in relapsing multiple sclerosis, European radiology , vol. 32, no. 3, pp. 2012—2022, 2022. Springer.
Bibtex: BibTeX
@article{weber2022association,
  title={Association of iron rim lesions with brain and cervical cord volume in relapsing multiple sclerosis},
  author={Weber, Claudia E and Kr{\"a}mer, Julia and Wittayer, Matthias and Gregori, Johannes and Randoll, Sigurd and Weiler, Florian and Heldmann, Stefan and Ro{\ss}manith, Christina and Platten, Michael and Gass, Achim and others},
  journal={European radiology},
  volume={32},
  number={3},
  pages={2012--2022},
  year={2022},
  publisher={Springer}
}
Malte Maria Sieren, Cornelia Widmann, Nick Weiss, Jan Hendrik Moltz, Florian Link, Franz Wegner, Erik Stahlberg, Marco Horn, Thekla Helene Oecherting, Jan Peter Goltz, and Harry Haynes,
Automated segmentation and quantification of the healthy and diseased aorta in CT angiographies using a dedicated deep learning approach, European radiology , vol. 32, no. 1, pp. 690—701, 2022. Springer.
Bibtex: BibTeX
@article{sieren2022automated,
  title={Automated segmentation and quantification of the healthy and diseased aorta in CT angiographies using a dedicated deep learning approach},
  author={Sieren, Malte Maria and Widmann, Cornelia and Weiss, Nick and Moltz, Jan Hendrik and Link, Florian and Wegner, Franz and Stahlberg, Erik and Horn, Marco and Oecherting, Thekla Helene and Goltz, Jan Peter and others},
  journal={European radiology},
  volume={32},
  number={1},
  pages={690--701},
  year={2022},
  publisher={Springer}
}
Daniel Romberg, Klaus Strohmenger, Christoph Jansen, Tobias Küster, Nick Weiss, Christian Geißler, Tomasz Sołtysiński, Michael Takla, Peter Hufnagl, Norman Zerbe, and Harry Haynes,
EMPAIA app interface: an open and vendor-neutral interface for AI applications in pathology, Computer methods and programs in biomedicine , vol. 215, pp. 106596, 2022. Elsevier.
Bibtex: BibTeX
@article{romberg2022empaia,
  title={EMPAIA app interface: an open and vendor-neutral interface for AI applications in pathology},
  author={Romberg, Daniel and Strohmenger, Klaus and Jansen, Christoph and K{\"u}ster, Tobias and Weiss, Nick and Gei{\ss}ler, Christian and So{\l}tysi{\'n}ski, Tomasz and Takla, Michael and Hufnagl, Peter and Zerbe, Norman and others},
  journal={Computer methods and programs in biomedicine},
  volume={215},
  pages={106596},
  year={2022},
  publisher={Elsevier}
}

2021

Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K.K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Egenio Iglesias, Tony C W Mok, Albert C S Chung, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Christoph Großbröhmer, Hanna Siebert, Lasse Hansen, Mattias P Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, and others,
The brain tumor sequence registration (brats-reg) challenge: Establishing correspondence between pre-operative and follow-up mri scans of diffuse glioma patients, arXiv preprint arXiv:2112.06979 , 2021.
Bibtex: BibTeX
@article{baheti2021brain,
  title={The brain tumor sequence registration (brats-reg) challenge: Establishing correspondence between pre-operative and follow-up mri scans of diffuse glioma patients},
  author={Baheti, Bhakti and Chakrabarty, Satrajit and Akbari, Hamed and Bilello, Michel and Wiestler, Benedikt and Schwarting, Julian and Calabrese, Evan and Rudie, Jeffrey and Abidi, Syed and Mousa, Mina and Villanueva-Meyer, Javier and Fields, Brandon K.K. and Kofler, Florian and Shinohara, Russell Takeshi and Iglesias, Juan Egenio and Mok, Tony C W and Chung, Albert C S and Wodzinski, Marek and Jurgas, Artur and Marini, Niccolo and Atzori, Manfredo and Müller, Henning and Großbröhmer, Christoph and Siebert, Hanna and Hansen, Lasse and Heinrich, Mattias P and Canalini, Luca and Klein, Jan and Gerken, Annika and Heldmann, Stefan and Hering, Alessa and others},
  journal={arXiv preprint arXiv:2112.06979},
  year={2021}
}
Sven Kuckertz, Florian Weiler, Britta Matusche, Carsten Lukas, Lothar Spies, Jan Klein, and Stefan Heldmann,
A system for fully automated monitoring of lesion evolution over time in multiple sclerosis, in Medical Imaging 2021: Computer-Aided Diagnosis , 2021. pp. 553—558.
Bibtex: BibTeX
@inproceedings{kuckertz2021system,
  title={A system for fully automated monitoring of lesion evolution over time in multiple sclerosis},
  author={Kuckertz, Sven and Weiler, Florian and Matusche, Britta and Lukas, Carsten and Spies, Lothar and Klein, Jan and Heldmann, Stefan},
  booktitle={Medical Imaging 2021: Computer-Aided Diagnosis},
  volume={11597},
  pages={553--558},
  year={2021},
  organization={SPIE}
}
Danielle Bednarski, and Jan Lellmann,
Inverse scale space iterations for non-convex variational problems using functional lifting, in International Conference on Scale Space and Variational Methods in Computer Vision , 2021. pp. 229—241.
DOI:10.1007/978-3-030-75549-2_19
Bibtex: BibTeX
@inproceedings{bednarski2021inverse,
  title={Inverse scale space iterations for non-convex variational problems using functional lifting},
  author={Bednarski, Danielle and Lellmann, Jan},
  booktitle={International Conference on Scale Space and Variational Methods in Computer Vision},
  pages={229--241},
  year={2021},
  organization={Springer}
}
Jan Lellmann, and Jan Modersitzki,
Guest Editorial: Scale Space and Variational Methods, Journal of Mathematical Imaging and Vision , vol. 63, no. 2, pp. 131—132, 2021. Springer.
DOI:10.1007/s10851-020-01012-0
Bibtex: BibTeX
@article{lellmann2021guest,
  title={Guest Editorial: Scale Space and Variational Methods},
  author={Lellmann, Jan and Modersitzki, Jan},
  journal={Journal of Mathematical Imaging and Vision},
  volume={63},
  number={2},
  pages={131--132},
  year={2021},
  publisher={Springer}
}
Kai Brehmer,
SqN: A Novel Distance Measure for Multiple Images and Applications, Institute of Mathematics and Image Computing, University of Lübeck, 2021.
File: K_Brehmer-Dissertation_SqN_final-online_publication_compressed.pdf
Bibtex: BibTeX
@phdthesis{2021-PhD-Brehmer,
  Author = {{Kai Brehmer}},
  Title = {SqN: A Novel Distance Measure for Multiple Images and Applications},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2021},
}
Sonja Jäckle, Veronica Garcia-Vazquez, Tim Eixmann, Florian Matysiak, Felix Haxthausen, Malte Sieren, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Floris Ernst, Markus Kleemann, and Torben Pätz,
Abstract: 3D Guidance Including Shape Sensing of a Stentgraft System, in Bildverarbeitung für die Medizin 2021 , Springer, 2021, pp. 34--34.
DOI:10.1007/978-3-658-33198-6_9
File: 10.1007%2F978-3-658-33198-6_9
Bibtex: BibTeX
@incollection{jaeckle20213BVM_3DCatheter,
  title={Abstract: 3D Guidance Including Shape Sensing of a Stentgraft System},
  author={J{\"a}ckle, Sonja and Garc\'ia-V{\'a}zquez, Ver{\'o}nica and Eixmann, Tim and Matysiak, Florian and von Haxthausen, Felix and Sieren, Malte and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and Ernst, Floris and Kleemann, Markus and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2021},
  pages={34--34},
  year={2021},
  doi={10.1007/978-3-658-33198-6_9},
  url={https://link.springer.com/chapter/10.1007%2F978-3-658-33198-6_9},
  keywords={NavEVAR},
  publisher={Springer}
}
Sonja Jäckle, Elias Röger, Volker Dicken, Benjamin Geisler, Jakob Schumacher, and Max Westphal,
A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions, International Journal of Environmental Research and Public Health , vol. 18, no. 17, 2021.
DOI:10.3390/ijerph18179166
File: 9166
Bibtex: BibTeX
@Article{jaeckle2021IJERPH,
AUTHOR = {Jäckle, Sonja and Röger, Elias and Dicken, Volker and Geisler, Benjamin and Schumacher, Jakob and Westphal, Max},
TITLE = {A Statistical Model to Assess Risk for Supporting COVID-19 Quarantine Decisions},
JOURNAL = {International Journal of Environmental Research and Public Health},
VOLUME = {18},
YEAR = {2021},
NUMBER = {17},
ARTICLE-NUMBER = {9166},
URL = {https://www.mdpi.com/1660-4601/18/17/9166},
ISSN = {1660-4601},
ABSTRACT = {In Germany, local health departments are responsible for surveillance of the current pandemic situation. One of their major tasks is to monitor infected persons. For instance, the direct contacts of infectious persons at group meetings have to be traced and potentially quarantined. Such quarantine requirements may be revoked, when all contact persons obtain a negative polymerase chain reaction (PCR) test result. However, contact tracing and testing is time-consuming, costly and not always feasible. In this work, we present a statistical model for the probability that no transmission of COVID-19 occurred given an arbitrary number of negative test results among contact persons. Hereby, the time-dependent sensitivity and specificity of the PCR test are taken into account. We employ a parametric Bayesian model which combines an adaptable Beta-Binomial prior and two likelihood components in a novel fashion. This is illustrated for group events in German school classes. The first evaluation on a real-world dataset showed that our approach can support important quarantine decisions with the goal to achieve a better balance between necessary containment of the pandemic and preservation of social and economic life. Future work will focus on further refinement and evaluation of quarantine decisions based on our statistical model.},
DOI = {10.3390/ijerph18179166}
}
Sonja Jäckle, Tim Eixmann, Florian Matysiak, Malte Maria Sieren, Marco Horn, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, and Torben Pätz,
3D Stent Graft Guidance based on Tracking Systems for Endovascular Aneurysm Repair, Current Directions in Biomedical Engineering , vol. 7, no. 1, pp. 17--20, 2021.
DOI:doi:10.1515/cdbme-2021-1004
File: cdbme-2021-1004
Bibtex: BibTeX
@article{jaeckle2021CURAC,
author = {Sonja Jäckle and Tim Eixmann and Florian Matysiak and Malte Maria Sieren and Marco Horn and Hinnerk Schulz-Hildebrandt and Gereon Hüttmann and Torben Pätz},
doi = {doi:10.1515/cdbme-2021-1004},
url = {https://doi.org/10.1515/cdbme-2021-1004},
title = {3D Stent Graft Guidance based on Tracking Systems for Endovascular Aneurysm Repair},
journal = {Current Directions in Biomedical Engineering},
number = {1},
volume = {7},
year = {2021},
keywords={NavEVAR},
pages = {17--20}
}
Sonja Jäckle,
Guidance of medical instruments based on tracking systems, Jacobs University Bremen, 2021.
Bibtex: BibTeX
@phdthesis{jackle2021guidance,
  title={Guidance of medical instruments based on tracking systems},
  author={Sonja J{\"a}ckle},
  year={2021},
  school={Jacobs University Bremen}
}
Sonja Jäckle, Annkristin Lange, Verónica García-Vázquez, Tim Eixmann, Florian Matysiak, Malte Maria Sieren, Marco Horn, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Floris Ernst, Stefan Heldmann, Torben Pätz, and Tobias Preusser,
Instrument localisation for endovascular aneurysm repair: Comparison of two methods based on tracking systems or using imaging, The International Journal of Medical Robotics and Computer Assisted Surgery , vol. 17, no. 6, pp. e2327, 2021.
Bibtex: BibTeX
@article{jaeckle2021IJMRCAS,
author = {Jäckle, Sonja and Lange, Annkristin and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and Sieren, Malte Maria and Horn, Marco and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Heldmann, Stefan and Pätz, Torben and Preusser, Tobias},
title = {Instrument localisation for endovascular aneurysm repair: Comparison of two methods based on tracking systems or using imaging},
journal = {The International Journal of Medical Robotics and Computer Assisted Surgery},
volume = {17},
number = {6},
pages = {e2327},
year = {2021},
keyword = {NavEVAR}
}

Johannes Lotz, Nick Weiss, Jeroen Laak, and Stefan Heldmann,
High-resolution image registration of consecutive and re-stained sections in histopathology, arXiv preprint arXiv:2106.13150 , 2021.
DOI:10.48550/arXiv.2106.13150
Bibtex: BibTeX
@article{lotz2021high,
  title={High-resolution image registration of consecutive and re-stained sections in histopathology},
  author={Lotz, Johannes and Weiss, Nick and van der Laak, Jeroen and Heldmann, Stefan},
  journal={arXiv preprint arXiv:2106.13150},
  year={2021}
}
Journal of Mathematical Imaging and Vision, Special Issue on Scale Space and Variational Methods in Computer Vision,
Bibtex: BibTeX
@Proceedings{Lellmann2021,
  title  = {Journal of Mathematical Imaging and Vision, Special Issue on Scale Space and Variational Methods in Computer Vision},
  year   = {2021},
  author = {Lellmann, J. and Modersitzki, J.},
}
W. Diepeveen, and J. Lellmann,
An Inexact Semismooth Newton Method on Riemannian Manifolds with Application to Duality-Based Total Variation Denoising, SIAM Journal on Imaging Sciences , vol. 14, no. 4, pp. 1565--1600, 2021.
Bibtex: BibTeX
@Article{Diepeveen2021,
  author  = {Diepeveen, W. and Lellmann, J.},
  title   = {An Inexact Semismooth {Newton} Method on {Riemannian} Manifolds with Application to Duality-Based Total Variation Denoising},
  journal = {{SIAM} Journal on Imaging Sciences},
  year    = {2021},
  volume  = {14},
  number  = {4},
  pages   = {1565--1600},
}
André Homeyer, Johannes Lotz, Lars Ole Schwen, Nick Weiss, Daniel Romberg, Henning Höfener, Norman Zerbe, and Peter Hufnagl,
Artificial Intelligence in Pathology: From Prototype to Product, Journal of Pathology Informatics , vol. 12, no. 1, pp. 13, 2021. Elsevier BV.
DOI:https://doi.org/10.4103/jpi.jpi_84_20
File: S2153353922001353
Bibtex: BibTeX
@article{Homeyer2021, 
doi={10.4103/jpi.jpi_84_20}, 
url={https://doi.org/10.4103%2Fjpi.jpi_84_20}, 
year={2021}, 
publisher={Elsevier {BV}}, 
volume={12}, 
number={1}, 
pages={13}, 
author={Homeyer, André and Lotz, Johannes and Schwen, Lars Ole and Weiss, Nick and Romberg, Daniel and Höfener, Henning and Zerbe, Norman and Hufnagl, Peter}, 
title={Artificial intelligence in pathology: From prototype to product}, 
journal={Journal of Pathology Informatics}
}
Alessa Hering, Lasse Hansen, Tony CW Mok, Albert Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, and Tanja Loßau,
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning, arXiv preprint arXiv:2112.04489 , 2021.
Bibtex: BibTeX
@article{hering2021learn2reg,
  title={Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning},
  author={Hering, Alessa and Hansen, Lasse and Mok, Tony CW and Chung, Albert and Siebert, Hanna and H{\"a}ger, Stephanie and Lange, Annkristin and Kuckertz, Sven and Heldmann, Stefan and Shao, Wei and others},
  journal={arXiv preprint arXiv:2112.04489},
  year={2021}
}
Alessa Hering, Annkristin Lange, Stefan Heldmann, Stephanie Häger, and Sven Kuckertz,
Fraunhofer MEVIS Image Registration Solutions for the Learn2Reg 2021 Challenge, in International Conference on Medical Image Computing and Computer-Assisted Intervention , 2021. pp. 147--152.
Bibtex: BibTeX
@inproceedings{hering2021fraunhofer,
  title={Fraunhofer MEVIS Image Registration Solutions for the Learn2Reg 2021 Challenge},
  author={Hering, Alessa and Lange, Annkristin and Heldmann, Stefan and H{\"a}ger, Stephanie and Kuckertz, Sven},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={147--152},
  year={2021},
  organization={Springer}
}
Alessa Hering, Felix Peisen, Teresa Amaral, Sergios Gatidis, Thomas Eigentler, Ahmed Othman, and Jan Hendrik Moltz,
Whole-Body Soft-Tissue Lesion Tracking and Segmentation in Longitudinal CT Imaging Studies, in Medical Imaging with Deep Learning , 2021. pp. 312--326.
Bibtex: BibTeX
@inproceedings{hering2021whole,
  title={Whole-Body Soft-Tissue Lesion Tracking and Segmentation in Longitudinal CT Imaging Studies},
  author={Hering, Alessa and Peisen, Felix and Amaral, Teresa and Gatidis, Sergios and Eigentler, Thomas and Othman, Ahmed and Moltz, Jan Hendrik},
  booktitle={Medical Imaging with Deep Learning},
  pages={312--326},
  year={2021},
  organization={PMLR}
}
Alessa Hering, Stephanie Häger, Jan Moltz, Nikolas Lessmann, Stefan Heldmann, and Bram Ginneken,
CNN-based lung CT registration with multiple anatomical constraints, Medical Image Analysis , vol. 72, pp. 102139, 2021. Elsevier.
Bibtex: BibTeX
@article{hering2021cnn,
  title={CNN-based lung CT registration with multiple anatomical constraints},
  author={Hering, Alessa and H{\"a}ger, Stephanie and Moltz, Jan and Lessmann, Nikolas and Heldmann, Stefan and van Ginneken, Bram},
  journal={Medical Image Analysis},
  volume={72},
  pages={102139},
  year={2021},
  publisher={Elsevier}
}
Holger R Roth, Ziyue Xu, Carlos Tor Diez, Ramon Sanchez Jacob, Jonathan Zember, Jose Molto, Wenqi Li, Sheng Xu, Baris Turkbey, Evrim Turkbey, and Tanja Loßau,
Rapid artificial intelligence solutions in a pandemic-the COVID-19-20 lung CT lesion segmentation challenge, Research Square , 2021. American Journal Experts.
Bibtex: BibTeX
@article{roth2021rapid,
  title={Rapid artificial intelligence solutions in a pandemic-the COVID-19-20 lung CT lesion segmentation challenge},
  author={Roth, Holger R and Xu, Ziyue and Diez, Carlos Tor and Jacob, Ramon Sanchez and Zember, Jonathan and Molto, Jose and Li, Wenqi and Xu, Sheng and Turkbey, Baris and Turkbey, Evrim and others},
  journal={Research Square},
  year={2021},
  publisher={American Journal Experts}
}
Florian Mannel,
On the order of convergence of Broyden’s method, Calcolo , vol. 58, no. 4, pp. 1--21, 2021.
DOI:10.1007/s10092-021-00441-6
Bibtex: BibTeX
@Article{Mannel4,
Author={{Mannel, Florian}},
Title={{On the order of convergence of Broyden’s method}},
FJournal={{Calcolo}},
Journal={{Calcolo}},
Volume={58},
Number={4},
Pages={1--21},
Year={2021},
Language={English},
doi={10.1007/s10092-021-00441-6},
}
Maschenka CA. Balkenhol, Francesco Ciompi, Żaneta Świderska-Chadaj, Rob van Loo, Milad Intezar, Irene Otte-Höller, Daan Geijs, Johannes Lotz, Nick Weiss, Thomas de Bel, Geert Litjens, Peter Bult, and Jeroen AWM van der Laak,
Optimized tumour infiltrating lymphocyte assessment for triple negative breast cancer prognostics, The Breast , vol. 56, pp. 78-87, 2021.
DOI:https://doi.org/10.1016/j.breast.2021.02.007
File: S0960977621000217
Harald Krenzlin, Dominik Wesp, Jan Schmitt, Christina Frenz, Elena Kurz, Julia Masomi-Bornwasser, Johannes Lotz, Florian Ringel, Thomas Kerz, and Naureen Keric,
Decreased superoxide dismutase concentrations (SOD) in plasma and CSF and increased circulating total antioxidant capacity (TAC) are associated with unfavorable neurological outcome after aneurysmal subarachnoid hemorrhage, Journal of Clinical Medicine , vol. 10, no. 6, pp. 1188, 2021. MDPI.
Bibtex: BibTeX
@article{krenzlin2021decreased,
  title={Decreased superoxide dismutase concentrations (SOD) in plasma and CSF and increased circulating total antioxidant capacity (TAC) are associated with unfavorable neurological outcome after aneurysmal subarachnoid hemorrhage},
  author={Krenzlin, Harald and Wesp, Dominik and Schmitt, Jan and Frenz, Christina and Kurz, Elena and Masomi-Bornwasser, Julia and Lotz, Johannes and Ringel, Florian and Kerz, Thomas and Keric, Naureen},
  journal={Journal of Clinical Medicine},
  volume={10},
  number={6},
  pages={1188},
  year={2021},
  publisher={MDPI}
}
Julia Masomi-Bornwasser, Elena Kurz, Christina Frenz, Jan Schmitt, Dominik MA Wesp, Jochem König, Johannes Lotz, Florian Ringel, Thomas Kerz, Harald Krenzlin, and P Hunold,
The influence of oxidative stress on neurological outcomes in spontaneous intracerebral hemorrhage, Biomolecules , vol. 11, no. 11, pp. 1615, 2021. MDPI.
Bibtex: BibTeX
@article{masomi2021influence,
  title={The influence of oxidative stress on neurological outcomes in spontaneous intracerebral hemorrhage},
  author={Masomi-Bornwasser, Julia and Kurz, Elena and Frenz, Christina and Schmitt, Jan and Wesp, Dominik MA and K{\"o}nig, Jochem and Lotz, Johannes and Ringel, Florian and Kerz, Thomas and Krenzlin, Harald and others},
  journal={Biomolecules},
  volume={11},
  number={11},
  pages={1615},
  year={2021},
  publisher={MDPI}
}
Andra-Iza Iuga, Tanja Loßau, Liliana Laurenco Caldeira, Miriam Rinneburger, Simon Lennartz, Nils Große Hokamp, Michael Püsken, Heike Carolus, David Maintz, Tobias Klinder, and Harry Haynes,
Automated mapping and N-Staging of thoracic lymph nodes in contrast-enhanced CT scans of the chest using a fully convolutional neural network, European Journal of Radiology , vol. 139, pp. 109718, 2021. Elsevier.
Bibtex: BibTeX
@article{iuga2021automated,
  title={Automated mapping and N-Staging of thoracic lymph nodes in contrast-enhanced CT scans of the chest using a fully convolutional neural network},
  author={Iuga, Andra-Iza and Lossau, Tanja and Caldeira, Liliana Laurenco and Rinneburger, Miriam and Lennartz, Simon and Hokamp, Nils Gro{\ss}e and P{\"u}sken, Michael and Carolus, Heike and Maintz, David and Klinder, Tobias and others},
  journal={European Journal of Radiology},
  volume={139},
  pages={109718},
  year={2021},
  publisher={Elsevier}
}

2020

Alessa Hering, Stephanie Häger, Jan Moltz, Nikolas Lessmann, Stefan Heldmann, and Bram Ginneken,
Constraining volume change in learned image registration for lung CTs, arXiv preprint arXiv:2011.14372 , pp. 3, 2020.
Bibtex: BibTeX
@article{hering2020constraining,
  title={Constraining volume change in learned image registration for lung CTs},
  author={Hering, Alessa and H{\"a}ger, Stephanie and Moltz, Jan and Lessmann, Nikolas and Heldmann, Stefan and van Ginneken, Bram},
  journal={arXiv preprint arXiv:2011.14372},
  pages={3},
  year={2020}
}
Alessa Hering, and Stefan Heldmann,
mlVIRNET: Improved Deep Learning Registration Using a Coarse to Fine Approach to Capture all Levels of Motion, in Bildverarbeitung für die Medizin 2020: Algorithmen—Systeme—Anwendungen. Proceedings des Workshops vom 15. bis 17. März 2020 in Berlin , 2020. pp. 175—175.
Bibtex: BibTeX
@inproceedings{hering2020mlvirnet,
  title={mlVIRNET: Improved Deep Learning Registration Using a Coarse to Fine Approach to Capture all Levels of Motion},
  author={Hering, Alessa and Heldmann, Stefan},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020: Algorithmen--Systeme--Anwendungen. Proceedings des Workshops vom 15. bis 17. M{\"a}rz 2020 in Berlin},
  pages={175--175},
  year={2020},
  organization={Springer}
}
V. Corona, J. Lellmann, P. Nestor, C.-B. Schönlieb, and J. Acosta-Cabronero,
A multi-contrast MRI approach to thalamus segmentation, Human Brain Mapping , 2020.
Bibtex: BibTeX
@Article{CoronaLellmannNestorEtAl2020,
  author =  {Corona, V. and Lellmann, J. and Nestor, P. and Sch\"onlieb, C.-B. and Acosta-Cabronero, J.},
  title =   {A multi-contrast MRI approach to thalamus segmentation},
  journal = {Human Brain Mapping},
  year =    {2020}
}
Thomas Polzin, Marc Niethammer, François-Xavier Vialard, and Jan Modersitzki,
A discretize–optimize approach for LDDMM registration, in Riemannian Geometric Statistics in Medical Image Analysis , Xavier Pennec and Stefan Sommer and Tom Fletcher, Eds. Academic Press, 2020, pp. 479 - 532.
DOI:https://doi.org/10.1016/B978-0-12-814725-2.00022-4
ISBN:978-0-12-814725-2
File: B9780128147252000224
Bibtex: BibTeX
@incollection{PolzinEtAl2020DiscretizeOptimize,
title = "A discretize–optimize approach for LDDMM registration",
editor = "Xavier Pennec and Stefan Sommer and Tom Fletcher",
booktitle = "Riemannian Geometric Statistics in Medical Image Analysis",
publisher = "Academic Press",
pages = "479 - 532",
year = "2020",
isbn = "978-0-12-814725-2",
doi = "https://doi.org/10.1016/B978-0-12-814725-2.00022-4",
url = "http://www.sciencedirect.com/science/article/pii/B9780128147252000224",
author = "Thomas Polzin and Marc Niethammer and François-Xavier Vialard and Jan Modersitzki",
keywords = "LDDMM, Discretize–Optimize, Image Registration, Optimal Control, Lung, Computed Tomography, Runge–Kutta Methods",
abstract = " Large deformation diffeomorphic metric mapping (LDDMM) is a popular approach for deformable image registration with nice mathematical properties. LDDMM encodes spatial deformations through time-varying velocity fields. Hence registration requires optimization over these time-varying velocity fields, resulting in a large-scale constrained optimization problem. Typical numerical solution approaches for LDDMM use an optimize–discretize strategy, where optimality conditions are derived in the continuum and subsequently discretized and solved. Here we explore solution methods based on the discretize–optimize approach and discuss ramifications for popular LDDMM relaxation and shooting approaches. The focus is on a consistent method that uses the appropriate Runge–Kutta methods for the solution of all arising PDEs in the Eulerian frame. Additionally, we discuss both run-time and memory consumption requirements and present an approach that makes the registration suitable for standard PCs. We demonstrate the practicality of our proposed approach in the context of image registration applied to 3D computed tomography (CT) scans of the lung."
}
Thomas Vogt,
Measure-Valued Variational Models with Applications in Image Processing, Institute of Mathematics and Image Computing, University of L\"ubeck, 2020.
File: phd_thesis_vogt_small.pdf
Bibtex: BibTeX
@phdthesis{2020-PhD-Vogt,
  Author = {Thomas Vogt},
  Title = {Measure-Valued Variational Models with Applications in Image Processing},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2020},
}
Sonja Jäckle, Verónica García-Vázquez, Felix Haxthausen, Tim Eixmann, Malte Maria Sieren, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Floris Ernst, Markus Kleemann, and Torben Paetz,
3D catheter guidance including shape sensing for endovascular navigation, in Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling , Baowei Fei and Cristian A. Linte, Eds. SPIE, 2020. pp. 21 -- 29.
DOI:10.1117/12.2548094
File: 12.2548094
Bibtex: BibTeX
@inproceedings{jaeckle2020SPIE,
author = {Jäckle, Sonja and García-Vázquez, Verónica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Paetz, Torben },
title = {{3D catheter guidance including shape sensing for endovascular navigation}},
volume = {11315},
booktitle = {Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling},
editor = {Baowei Fei and Cristian A. Linte},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {21 -- 29},
keywords = {catheter guidance, electromagnetic tracking, fiber Bragg gratings, shape sensing, endovascular navigation, endovascular aneurysm repair, NavEVAR},
year = {2020},
doi = {10.1117/12.2548094},
URL = {https://doi.org/10.1117/12.2548094}
}
Sonja Jäckle, Tim Eixmann, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, and Torben Pätz,
Abstract: Fiber Optical Shape Sensing of Flexible Instruments, in Bildverarbeitung für die Medizin 2020 , Springer, 2020, pp. 314--314.
DOI:10.1007/978-3-658-29267-6_70
File: 978-3-658-29267-6_70
Bibtex: BibTeX
@incollection{jaeckle2020BVM_FOSS,
  title={Abstract: Fiber Optical Shape Sensing of Flexible Instruments},
  author={J{\"a}ckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={314--314},
  year={2020},
  keywords={NavEVAR},
  url={https://link.springer.com/chapter/10.1007/978-3-658-29267-6_70},
  doi={10.1007/978-3-658-29267-6_70},
  publisher={Springer}
}
Sonja Jäckle, Veronica Garcia-Vazquez, Felix Haxthausen, Tim Eixmann, Malte Maria Sieren, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Floris Ernst, Markus Kleemann, and Torben Pätz,
Abstract: 3D Catheter Guidance Including Shape Sensing for Endovascular Navigation, in Bildverarbeitung für die Medizin 2020 , Springer, 2020, pp. 261--261.
DOI:10.1007/978-3-658-29267-6_58
File: 978-3-658-29267-6_58
Bibtex: BibTeX
@incollection{jaeckle20203BVM_3DCatheter,
  title={Abstract: 3D Catheter Guidance Including Shape Sensing for Endovascular Navigation},
  author={J{\"a}ckle, Sonja and Garc\'ia-V{\'a}zquez, Ver{\'o}nica and von Haxthausen, Felix and Eixmann, Tim and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and Ernst, Floris and Kleemann, Markus and P{\"a}tz, Torben},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={261--261},
  year={2020},
  doi={10.1007/978-3-658-29267-6_58},
  url={https://link.springer.com/chapter/10.1007/978-3-658-29267-6_58},
  keywords={NavEVAR},
  publisher={Springer}
}
Annkristin Lange, and Stefan Heldmann,
Intensity-Based 2D-3D Registration Using Normalized Gradient Fields, in Bildverarbeitung für die Medizin 2020 , Springer, 2020, pp. 163--168.
File: 978-3-658-29267-6_33
Bibtex: BibTeX
@incollection{lange2020intensity,
  title={Intensity-Based 2D-3D Registration Using Normalized Gradient Fields},
  author={Lange, Annkristin and Heldmann, Stefan},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
  pages={163--168},
  year={2020},
  keywords={NavEVAR},
  url={https://doi.org/10.1007/978-3-658-29267-6_33},
  publisher={Springer}
}
Sonja Jäckle, Verónica García-Vázquez, Tim Eixmann, Florian Matysiak, Haxthausen, Malte Maria Sieren, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Floris Ernst, Markus Kleemann, and Torben Paetz,
Three-dimensional guidance including shape sensing of a stentgraft system for endovascular aneurysm repair, International Journal of Computer Assisted Radiology and Surgery , 2020.
File: s11548-020-02167-2
Bibtex: BibTeX
@article{jaeckle2020IJCARS,
author = {Jäckle, Sonja and García-Vázquez, Verónica and Eixmann, Tim and Matysiak, Florian and von Haxthausen, Felix, and Sieren, Malte Maria and Schulz-Hildebrandt, Hinnerk and Hüttmann, Gereon and Ernst, Floris and Kleemann, Markus and Paetz, Torben },
title = {{Three-dimensional guidance including shape sensing of a stentgraft system for endovascular aneurysm repair}},
journal={International Journal of Computer Assisted Radiology and Surgery},
year={2020},
keywords = {NavEVAR},
url={https://doi.org/10.1007/s11548-020-02167-2},
}
Johannes Lotz,
Combined Local and Global Image Registration and its Application to Large-Scale Images in Digital Pathology, Institute of Mathematics and Image Computing, University of Lübeck, 2020.
File: ediss2302.pdf
Bibtex: BibTeX
@phdthesis{2020-PhD-Lotz,
  Author = {Johannes Lotz},
  Title = {Combined Local and Global Image Registration and its Application to Large-Scale Images in Digital Pathology},
  School = {Institute of Mathematics and Image Computing, University of Lübeck},
  Year = {2020},
}
Sven Kuckertz, Nils Papenberg, Jonas Honegger, Tomasz Morgas, Benjamin Haas, and Stefan Heldmann,
Deep learning based CT-CBCT image registration for adaptive radio therapy, in Medical Imaging 2020: Image Processing , 2020. pp. 113130Q.
File: 10.1117%2F12.2549531
Bibtex: BibTeX
@inproceedings{kuckertz2020SPIE,
  title={Deep learning based CT-CBCT image registration for adaptive radio therapy},
  author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
  booktitle={Medical Imaging 2020: Image Processing},
  volume={11313},
  pages={113130Q},
  year={2020},
  organization={International Society for Optics and Photonics},
  url={http://dx.doi.org/10.1117%2F12.2549531}
}
Annkristin Lange, and Stefan Heldmann,
Multilevel 2D-3D Intensity-Based Image Registration, in International Workshop on Biomedical Image Registration , 2020. pp. 57--66.
File: 978-3-030-50120-4_6
Bibtex: BibTeX
@inproceedings{lange2020multilevel,
  title={Multilevel 2D-3D Intensity-Based Image Registration},
  author={Lange, Annkristin and Heldmann, Stefan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={57--66},
  year={2020},
  organization={Springer},
  keywords={NavEVAR},
  url={https://doi.org/10.1007/978-3-030-50120-4_6}
}
Sven Kuckertz, Nils Papenberg, Jonas Honegger, Tomasz Morgas, Benjamin Haas, and Stefan Heldmann,
Abstract: Deep Learning Based CT-CBCT Image Registration for Adaptive Radio Therapy, in Bildverarbeitung für die Medizin 2020 , Tolxdorff, Thomas and Deserno, Thomas M. and Handels, Heinz and Maier, Andreas and Maier-Hein, Klaus H. and Palm, Christoph, Eds. Springer, 2020. pp. 229--229.
ISBN:978-3-658-29267-6
File: 978-3-658-29267-6_51
Bibtex: BibTeX
@InProceedings{kuckertz2020BVM,
author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
editor={Tolxdorff, Thomas and Deserno, Thomas M. and Handels, Heinz and Maier, Andreas and Maier-Hein, Klaus H. and Palm, Christoph},
title={Abstract: Deep Learning Based CT-CBCT Image Registration for Adaptive Radio Therapy},
booktitle={Bildverarbeitung f{\"u}r die Medizin 2020},
year={2020},
publisher={Springer},
pages={229--229},
isbn={978-3-658-29267-6},
url={https://doi.org/10.1007/978-3-658-29267-6_51}
}
Sven Kuckertz, Nils Papenberg, Jonas Honegger, Tomasz Morgas, Benjamin Haas, and Stefan Heldmann,
Learning Deformable Image Registration with Structure Guidance Constraints for Adaptive Radiotherapy, in International Workshop on Biomedical Image Registration , 2020. pp. 44--53.
File: 10.1007%2F978-3-030-50120-4_5
Bibtex: BibTeX
@inproceedings{kuckertz2020WBIR,
  title={Learning Deformable Image Registration with Structure Guidance Constraints for Adaptive Radiotherapy},
  author={Kuckertz, Sven and Papenberg, Nils and Honegger, Jonas and Morgas, Tomasz and Haas, Benjamin and Heldmann, Stefan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={44--53},
  year={2020},
  organization={Springer},
  url={http://dx.doi.org/10.1007%2F978-3-030-50120-4_5}
}
Jiří Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul Yushkevich, Shengyu Zhao, and Arrate Muñoz-Barrutia,
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge, IEEE Transactions on Medical Imaging , vol. 39, no. 10, pp. 3042-3052, 2020. IEEE.
DOI:10.1109/TMI.2020.2986331
File: tmi.2020.2986331
C. Mercan, G.C.A.M. Mooij, D. Tellez, J. Lotz, N. Weiss, M. Gerven, and F. Ciompi,
Virtual Staining for Mitosis Detection in Breast Histopathology, in 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) , IEEE, 2020. pp. 1770-1774.
DOI:10.1109/ISBI45749.2020.9098409
File: isbi45749.2020.9098409
Bibtex: BibTeX
@inproceedings{Lotz2020ISBI,
  author={Mercan, C. and Mooij, G.C.A.M. and Tellez, D. and Lotz, J. and Weiss, N. and van Gerven, M. and Ciompi, F.},
  title={Virtual Staining for Mitosis Detection in Breast Histopathology},
  journal={2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI)},
  publisher={IEEE}
  year={2020},
  url={https://doi.org/10.1109/isbi45749.2020.9098409},
}
Verónica García-Vázquez, Florian Matysiak, Sonja Jäckle, Tim Eixmann, Malte Maria Sieren, Felix Haxthausen, and Floris Ernst,
Catheter pose-dependent virtual angioscopy images for endovascular aortic repair: validation with a video graphics array (VGA) camera, Current Directions in Biomedical Engineering , vol. 6, no. 1, 2020. De Gruyter.
Bibtex: BibTeX
@article{garcia2020catheter,
  title={Catheter pose-dependent virtual angioscopy images for endovascular aortic repair: validation with a video graphics array (VGA) camera},
  author={García-Vázquez, Verónica and Matysiak, Florian and Jäckle, Sonja and Eixmann, Tim and Sieren, Malte Maria and von Haxthausen, Felix and Ernst, Floris},
  journal={Current Directions in Biomedical Engineering},
  volume={6},
  number={1},
  year={2020},
  keywords={NavEVAR},
  publisher={De Gruyter}
}
Hari Om Aggrawal, Martin S. Andersen, and Jan Modersitzki,
An Image Registration Framework for Discontinuous Mappings Along Cracks, in International Workshop on Biomedical Image Registration , Springer, 2020. pp. 163--173.
DOI:{{10.1007/978-3-030-50120-4_16}}
File: 978-3-030-50120-4_16}}
Bibtex: BibTeX
@inproceedings{Aggrawal2020WBIR,
author={Aggrawal, Hari Om and Andersen, Martin S. and Modersitzki, Jan},
title={An Image Registration Framework for Discontinuous Mappings Along Cracks},
booktitle={International Workshop on Biomedical Image Registration},
year={2020},
publisher={Springer},
pages={163--173},
url={{{https://doi.org/10.1007/978-3-030-50120-4_16}}},
doi={{{10.1007/978-3-030-50120-4_16}}}
}
Hari Om Aggrawal, and Jan Modersitzki,
Accelerating the Registration of Image Sequences by Spatio-Temporal Multilevel Strategies, in Proceedings - International Symposium on Biomedical Imaging , IEEE Computer Society, 2020. pp. 683--686.
DOI:{{10.1109/ISBI45749.2020.9098520}}
File: ISBI45749.2020.9098520}}
Bibtex: BibTeX
@inproceedings{Aggrawal2020ISBI,
author={Aggrawal, Hari Om and Modersitzki, Jan},
title={Accelerating the Registration of Image Sequences by Spatio-Temporal Multilevel Strategies},
booktitle={Proceedings - International Symposium on Biomedical Imaging},
year={2020},
publisher={IEEE Computer Society},
pages={683--686},
url={{{https://doi.org/10.1109/ISBI45749.2020.9098520}}},
doi={{{10.1109/ISBI45749.2020.9098520}}}
}
S. Parisotto, J. Lellmann, S. Masnou, and C. Schönlieb,
Higher-Order Total Directional Variation: Imaging Applications, SIAM Journal on Imaging Sciences , vol. 13, no. 4, pp. 2063--2104, 2020.
Bibtex: BibTeX
@Article{ParisottoLellmannMasnouSchoenlieb2020,
  author  = {Parisotto, S. and Lellmann, J. and Masnou, S. and Sch{\"o}nlieb, C.},
  title   = {Higher-Order Total Directional Variation: Imaging Applications},
  journal = {{SIAM} Journal on Imaging Sciences},
  year    = {2020},
  volume  = {13},
  number  = {4},
  pages   = {2063--2104},
}
Stephanie Häger, Stefan Heldmann, Alessa Hering, Sven Kuckertz, and Annkristin Lange,
Variable fraunhofer MEVIS RegLib comprehensively applied to Learn2Reg challenge, in International Conference on Medical Image Computing and Computer-Assisted Intervention , 2020. pp. 74--79.
Bibtex: BibTeX
@inproceedings{hager2020variable,
  title={Variable fraunhofer MEVIS RegLib comprehensively applied to Learn2Reg challenge},
  author={H{\"a}ger, Stephanie and Heldmann, Stefan and Hering, Alessa and Kuckertz, Sven and Lange, Annkristin},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={74--79},
  year={2020},
  organization={Springer}
}
MM Sieren, F Brenne, A Hering, H Kienapfel, N Gebauer, TH Oechtering, A Fürschke, F Wegner, E Stahlberg, S Heldmann, and Tanja Loßau,
Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software, European radiology , vol. 30, no. 6, pp. 3198—3209, 2020. Springer.
Bibtex: BibTeX
@article{sieren2020rapid,
  title={Rapid study assessment in follow-up whole-body computed tomography in patients with multiple myeloma using a dedicated bone subtraction software},
  author={Sieren, MM and Brenne, F and Hering, A and Kienapfel, H and Gebauer, N and Oechtering, TH and F{\"u}rschke, A and Wegner, F and Stahlberg, E and Heldmann, S and others},
  journal={European Radiology},
  volume={30},
  number={6},
  pages={3198--3209},
  year={2020},
  publisher={Springer}
}
Bianca Lassen-Schmidt, Alessa Hering, Stefan Krass, and Hans Meine,
Automatic segmentation of the pulmonary lobes with a 3D u-net and optimized loss function, arXiv preprint arXiv:2006.00083 , 2020.
Bibtex: BibTeX
@article{lassen2020automatic,
  title={Automatic segmentation of the pulmonary lobes with a 3D u-net and optimized loss function},
  author={Lassen-Schmidt, Bianca and Hering, Alessa and Krass, Stefan and Meine, Hans},
  journal={arXiv preprint arXiv:2006.00083},
  year={2020}
}
Thomas Vogt, Roland Haase, Danielle Bednarski, and Jan Lellmann,
On the connection between dynamical optimal transport and functional lifting, arXiv preprint arXiv:2007.02587 , 2020.
Bibtex: BibTeX
@article{vogt2020connection,
  title={On the connection between dynamical optimal transport and functional lifting},
  author={Vogt, Thomas and Haase, Roland and Bednarski, Danielle and Lellmann, Jan},
  journal={arXiv preprint arXiv:2007.02587},
  year={2020}
}
Thomas Polzin, Marc Niethammer, François-Xavier Vialard, and Jan Modersitzki,
A discretize—optimize approach for LDDMM registration, in Riemannian Geometric Statistics in Medical Image Analysis , Elsevier, 2020, pp. 479—532.
Bibtex: BibTeX
@incollection{polzin2020discretize,
  title={A discretize--optimize approach for LDDMM registration},
  author={Polzin, Thomas and Niethammer, Marc and Vialard, Fran{\c{c}}ois-Xavier and Modersitzki, Jan},
  booktitle={Riemannian Geometric Statistics in Medical Image Analysis},
  pages={479--532},
  year={2020},
  publisher={Elsevier}
}
Yenjung Chen, Nilay Yatinkumar Shah, Subhra Sundar Goswami, Annkristin Lange, Felix Von Haxthausen, Malte Maria Sieren, Jannis Hagenah, Floris Ernst, and Verónica Garcia-Vázquez,
Localization of endovascular tools in X-ray images using a motorized C-arm: visualization on HoloLens, in Current Directions in Biomedical Engineering , 2020. pp. 20200029.
Bibtex: BibTeX
@inproceedings{chen2020localization,
  title={Localization of endovascular tools in X-ray images using a motorized C-arm: visualization on HoloLens},
  author={Chen, Yenjung and Shah, Nilay Yatinkumar and Goswami, Subhra Sundar and Lange, Annkristin and Von Haxthausen, Felix and Sieren, Malte Maria and Hagenah, Jannis and Ernst, Floris and Garc{\'\i}a-V{\'a}zquez, Ver{\'o}nica},
  booktitle={Current Directions in Biomedical Engineering},
  volume={6},
  number={1},
  pages={20200029},
  year={2020},
  organization={De Gruyter}
}

2019

Felix Haxthausen, Sonja Jäckle, Juljan Bouchagiar, Florian Matysiak, Mark Kaschwich, Jan Peter Goltz, Erik Stahlberg, Markus Kleemann, Floris Ernst, and Verónica Garcia-Vázquez,
An augmented reality guidance system for endovascular aortic repair: first steps in reducing radiation exposure, in CARS 2019—Computer Assisted Radiology and Surgery Proceedings of the 33th International Congress and Exhibition , 2019.
Bibtex: BibTeX
@inproceedings{von2019augmented,
  title={An augmented reality guidance system for endovascular aortic repair: first steps in reducing radiation exposure},
  author={von Haxthausen, Felix and J{\"a}ckle, Sonja and Bouchagiar, Juljan and Matysiak, Florian and Kaschwich, Mark and Goltz, Jan Peter and Stahlberg, Erik and Kleemann, Markus and Ernst, Floris and Garc{\'\i}a-V{\'a}zquez, Ver{\'o}nica},
  booktitle={CARS 2019—Computer Assisted Radiology and Surgery Proceedings of the 33th International Congress and Exhibition},
  year={2019}
}
Mark Kaschwich, Florian Matysiak, Juljan Bouchagiar, Marco Horn, Verónica Garcia-Vázquez, Felix Haxthausen, Sonja Jäckle, Tim Eixmann, Jan Peter Goltz, Floris Ernst, and others,
Augmented Reality navigierte endovaskuläre Chirurgie—das NavEVAR-Projekt, in 35. Jahrestagung der Deutschen Gesellschaft für Gefäßchirurgie und Gefäßmedizin , 2019.
Bibtex: BibTeX
@inproceedings{kaschwich2019augmented,
  title={Augmented Reality navigierte endovaskul{\"a}re Chirurgie--das NavEVAR-Projekt},
  author={Kaschwich, Mark and Matysiak, Florian and Bouchagiar, Juljan and Horn, Marco and Garc{\'\i}a-V{\'a}zquez, Ver{\'o}nica and von Haxthausen, Felix and J{\"a}ckle, Sonja and Eixmann, Tim and Goltz, Jan Peter and Ernst, Floris and others},
  booktitle={35. Jahrestagung der Deutschen Gesellschaft f{\"u}r Gef{\"a}{\ss}chirurgie und Gef{\"a}{\ss}medizin},
  year={2019}
}
Marco Horn, Sonja Jäckle, Felix Haxthausen, Tim Eixmann, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, Juljan Bouchagiar, Florian Matysiak, Mark Kaschwich, Markus Kleemann, and others,
First Steps into Catheter Guidance Including Shape Sensing for Endovascular Aneurysm Repair Procedures, European Journal of Vascular and Endovascular Surgery , vol. 58, no. 6, pp. e610—e611, 2019. Elsevier.
Bibtex: BibTeX
@article{horn2019first,
  title={First Steps into Catheter Guidance Including Shape Sensing for Endovascular Aneurysm Repair Procedures},
  author={Horn, Marco and J{\"a}ckle, Sonja and von Haxthausen, Felix and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and Bouchagiar, Juljan and Matysiak, Florian and Kaschwich, Mark and Kleemann, Markus and others},
  journal={European Journal of Vascular and Endovascular Surgery},
  volume={58},
  number={6},
  pages={e610--e611},
  year={2019},
  publisher={Elsevier}
}
Juljan Bouchagiar, Felix Haxthausen, Sonja Jäckle, Florian Matysiak, Mark Kaschwich, Jan Peter Goltz, Marco Horn, Erik Stahlberg, Verónica Garcia-Vázquez, Floris Ernst, and others,
NAV EVAR Auf dem Weg zur strahlungsfreien Stentgraft Implantation, 2019.
Bibtex: BibTeX
@article{bouchagiar2019nav,
  title={NAV EVAR Auf dem Weg zur strahlungsfreien Stentgraft Implantation},
  author={Bouchagiar, Juljan and von Haxthausen, Felix and J{\"a}ckle, Sonja and Matysiak, Florian and Kaschwich, Mark and Goltz, Jan Peter and Horn, Marco and Stahlberg, Erik and Garc{\'\i}a-V{\'a}zquez, Ver{\'o}nica and Ernst, Floris and others},
  year={2019}
}
Marian Himstedt, Alexander Derksen, Nils Papenberg, Jonas Honegger, Benjamin Haas, Tomasz Morgas, Nikola Cihoric, Supriya Chopra, Akshay Mangaj, and Jamema Swamidas,
Deformable image registration using structure guidance for dose accumulation, in Proceedings of the International Conference on the Use of Computers in Radiation Therapy (ICCR) , 2019.
Bibtex: BibTeX
@inproceedings{himstedt2019deformable,
  title={Deformable image registration using structure guidance for dose accumulation},
  author={Himstedt, Marian and Derksen, Alexander and Papenberg, Nils and Honegger, Jonas and Haas, Benjamin and Morgas, Tomasz and Cihoric, Nikola and Chopra, Supriya and Mangaj, Akshay and Swamidas, Jamema},
  booktitle={Proceedings of the International Conference on the Use of Computers in Radiation Therapy (ICCR)},
  year={2019}
}
Sonja Jäckle, Tim Eixmann, Hinnerk Schulz-Hildebrandt, Gereon Hüttmann, and Torben Pätz,
Fiber optical shape sensing of flexible instruments for endovascular navigation, International Journal of Computer Assisted Radiology and Surgery , vol. 14, no. 12, pp. 2137--2145, 2019.
File: s11548-019-02059-0
Bibtex: BibTeX
@article{jaeckle2019FOSS,
  author={J{\"a}ckle, Sonja and Eixmann, Tim and Schulz-Hildebrandt, Hinnerk and H{\"u}ttmann, Gereon and P{\"a}tz, Torben},
  title={Fiber optical shape sensing of flexible instruments for endovascular navigation},
  journal={International Journal of Computer Assisted Radiology and Surgery},
  year={2019},
  volume={14},
  number={12},
  pages={2137--2145},
  keywords = {NavEVAR},
  url={https://doi.org/10.1007/s11548-019-02059-0},
}
Thomas Vogt, and Jan Lellmann,
Functional Liftings of Vectorial Variational Problems with Laplacian Regularization, in Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings , Burger, Martin and Lellmann, Jan and Modersitzki, Jan, Eds. Springer International Publishing, 2019. pp. 559--571.
DOI:10.1007/978-3-030-22368-7_44
Bibtex: BibTeX
@inproceedings{VogtLellmann2019,
author={Vogt, Thomas and Lellmann, Jan},
title={Functional Liftings of Vectorial Variational Problems with Laplacian Regularization},
booktitle={Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings},
year={2019},
editor={Burger, Martin and Lellmann, Jan and Modersitzki, Jan},
publisher={Springer International Publishing},
pages={559--571},
url={{{https://arxiv.org/pdf/1904.00898.pdf}}},
doi={{{10.1007/978-3-030-22368-7_44}}}
}
Kai Brehmer, Hari Om Aggrawal, Stefan Heldmann, and Jan Modersitzki,
Variational registration of multiple images with the SVD based SqN distance measure, in Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings , Burger, Martin and Lellmann, Jan and Modersitzki, Jan, Eds. Springer International Publishing, 2019. pp. 251--262.
DOI:10.1007/978-3-030-22368-7_20
Bibtex: BibTeX
@inproceedings{Brehmer2019,
author={Brehmer, Kai and Aggrawal, Hari Om and Heldmann, Stefan and Modersitzki, Jan},
title={Variational registration of multiple images with the SVD based SqN distance measure},
booktitle={Scale Space and Variational Methods in Computer Vision: 7th International Conference, SSVM 2019, Hofgeismar, Germany, June 30-July 4, 2019, Proceedings},
year={2019},
editor={Burger, Martin and Lellmann, Jan and Modersitzki, Jan},
publisher={Springer International Publishing},
pages={251--262},
url={{{https://arxiv.org/abs/1907.09732}}},
doi={{{10.1007/978-3-030-22368-7_20}}}
}
Benjamin Wacker,
Two variants of magnetic diffusivity stabilized finite element methods for the magnetic induction equation, Mathematical Methods in the Applied Sciences , 2019. Wiley Online Library.
Bibtex: BibTeX
@article{Wacker2019,
  title={Two variants of magnetic diffusivity stabilized finite element methods for the magnetic induction equation},
  author={Wacker, Benjamin},
  journal={Mathematical Methods in the Applied Sciences},
  year={2019},
  publisher={Wiley Online Library}
}
Thomas Vogt, Evgeny Strekalovskiy, Daniel Cremers, and Jan Lellmann,
Lifting methods for manifold-valued variational problems, in Variational Methods for Nonlinear Geometric Data and Applications , Grohs, Philipp and Holler, Martin and Weinmann, Andreas, Eds. Springer International Publishing, 2019, pp. In press.
DOI:10.1007/978-3-030-31351-7_3
Bibtex: BibTeX
@incollection{VogtEtAl2019,
author={Vogt, Thomas and Strekalovskiy, Evgeny and Cremers, Daniel and Lellmann, Jan},
title={Lifting methods for manifold-valued variational problems},
series={Springer Handbooks},
booktitle={Variational Methods for Nonlinear Geometric Data and Applications},
editor={Grohs, Philipp and Holler, Martin and Weinmann, Andreas},
publisher={Springer International Publishing},
pages={In press},
year={2019},
url={{{https://arxiv.org/pdf/1908.03776.pdf}}},
doi={{{10.1007/tba}}}
}
Felix Haxthausen, Sonja Jäckle, Jan Strehlow, Floris Ernst, and Veronica García-Vazquez,
Catheter pose-dependent virtual angioscopy images visualized on augmented reality glasses, 2019. pp. 289-291.
File: cdbme-2019-0073.xml
Bibtex: BibTeX
@INPROCEEDINGS{vonHaxthausen2019,
    author = {von Haxthausen, Felix and J{\"{a}}ckle, Sonja and Strehlow, Jan and Ernst, Floris and  Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica},
     title = {Catheter pose-dependent virtual angioscopy images visualized on augmented reality glasses},
   journal = {Current Directions in Biomedical Engineering},
    volume = {5},
    number = {1},
      year = {2019},
     keywords = {NavEVAR},
     pages = {289-291},
     url={https://www.degruyter.com/view/j/cdbme.2019.5.issue-1/cdbme-2019-0073/cdbme-2019-0073.xml}
}
Valentin Kraft, Jan Strehlow, Sonja Jäckle, Veronica García-Vazquez, Florian Link, Felix Haxthausen, Andrea Schenk, and Christian Schumann,
A comparison of streaming methods for the Microsoft HoloLens, in Tagungsgband der 18. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC) , Oliver Burgert, Hochschule Reutlingen, Bernhard Hirt, Universität Tübingen, Sep.2019. pp. 212-216.
ISBN:978-3-00-063717-9
Bibtex: BibTeX
@INPROCEEDINGS{kraft2019,
     author = {Kraft, Valentin and Strehlow, Jan and J{\"{a}}ckle, Sonja and Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica and Link, Florian and von Haxthausen, Felix and Schenk, Andrea and Schumann, Christian},
      month = sep,
      title = {A comparison of streaming methods for the Microsoft HoloLens},
  booktitle = {Tagungsgband der 18. Jahrestagung der Deutschen Gesellschaft f{\"u}r Computer- und Roboterassistierte Chirurgie (CURAC)},
       year = {2019},
      pages = {212-216},
  publisher = {Oliver Burgert, Hochschule Reutlingen, Bernhard Hirt, Universit{\"a}t T{\"u}bingen},
   location = {Reutlingen (Germany)},
       isbn = {978-3-00-063717-9}
}


Sonja Jäckle, Jan Strehlow, and Stefan Heldmann,
Shape Sensing with Fiber Bragg Grating Sensors, in Bildverarbeitung für die Medizin 2019 , Springer, 2019, pp. 258--263.
File: 10.1007%2F978-3-658-25326-4_58
Bibtex: BibTeX
@incollection{jaeckle2019shape,
  title={Shape Sensing with Fiber Bragg Grating Sensors},
  author={J{\"a}ckle, Sonja and Strehlow, Jan and Heldmann, Stefan},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2019},
  pages={258--263},
  year={2019},
  publisher={Springer},
  keywords = {NavEVAR},
  url={https://link.springer.com/chapter/10.1007%2F978-3-658-25326-4_58},
}
J. Lellmann, M. Burger, and J. (eds.) Modersitzki,
Proceedings of the 7th International Conference On Scale Space and Variational Methods in Computer Vision (SSVM 2019)., .... Springer, 2019.
Bibtex: BibTeX
@Book{LellmannBurgerModersitzki2019,
  title =     {Proceedings of the 7th International Conference On Scale Space and Variational Methods in Computer Vision (SSVM 2019)},
  publisher = {Springer},
  year =      {2019},
  author = {Lellmann, J. and Burger, M. and Modersitzki, J. (eds.)},
  series =    {Lecture Notes in Computer Science}
}
Daniel Budelmann, Lars König, Nils Papenberg, and Jan Lellmann,
Fully-Deformable 3D Image Registration in Two Seconds, in Bildverarbeitung für die Medizin 2019 , Handels, Heinz and Deserno, Thomas M. and Maier, Andreas and Maier-Hein, Klaus Hermann and Palm, Christoph and Tolxdorff, Thomas, Eds. Wiesbaden: Springer Fachmedien Wiesbaden, 2019. pp. 302--307.
Bibtex: BibTeX
@InProceedings{BudelmannPapenbergLellmann2018,
  author =    {Budelmann, Daniel and K{\"o}nig, Lars and Papenberg, Nils and Lellmann, Jan},
  title =     {Fully-Deformable 3D Image Registration in Two Seconds},
  booktitle = {Bildverarbeitung f{\"u}r die Medizin 2019},
  year =      {2019},
  editor =    {Handels, Heinz and Deserno, Thomas M. and Maier, Andreas and Maier-Hein, Klaus Hermann and Palm, Christoph and Tolxdorff, Thomas},
  pages =     {302--307},
  address =   {Wiesbaden},
  publisher = {Springer Fachmedien Wiesbaden}
}
Oliver Klein, Frederic Kanter, Hagen Kulbe, Paul Jank, Carsten Denkert, Grit Nebrich, Wolfgang D. Schmitt, Zhiyang Wu, Catarina A. Kunze, Jalid Sehouli, Silvia Darb-Esfahani, Ioana Braicu, Jan Lellmann, Herbert Thiele, and Eliane T. Taube,
MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods, PROTEOMICS – Clinical Applications , vol. 13, no. 1, pp. 1700181, 2019.
DOI:10.1002/prca.201700181
File: prca.201700181
Bibtex: BibTeX
@article{OliverEtAl2019,
author = {Klein, Oliver and Kanter, Frederic and Kulbe, Hagen and Jank, Paul and Denkert, Carsten and Nebrich, Grit and Schmitt, Wolfgang D. and Wu, Zhiyang and Kunze, Catarina A. and Sehouli, Jalid and Darb-Esfahani, Silvia and Braicu, Ioana and Lellmann, Jan and Thiele, Herbert and Taube, Eliane T.},
title = {MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods},
journal = {PROTEOMICS – Clinical Applications},
volume = {13},
number = {1},
pages = {1700181},
doi = {10.1002/prca.201700181},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201700181},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/prca.201700181},
abstract = {Purpose Precise histological classification of epithelial ovarian cancer (EOC) has immanent diagnostic and therapeutic consequences, but remains challenging in histological routine. The aim of this pilot study is to examine the potential of matrix-assisted laser desorption/ionization (MALDI) imaging mass spectrometry in combination with machine learning methods to classify EOC histological subtypes from tissue microarray. Experimental design Formalin-fixed-paraffin-embedded tissue of 20 patients with ovarian clear-cell, 14 low-grade serous, 19 high-grade serous ovarian carcinomas, and 14 serous borderline tumors are analyzed using MALDI-Imaging. Classifications are computed by linear discriminant analysis (LDA), support vector machines with linear (SVM-lin) and radial basis function kernels (SVM-rbf), a neural network (NN), and a convolutional neural network (CNN). Results MALDI-Imaging and machine learning methods result in classification of EOC histotypes with mean accuracy of 80\% for LDA, 80\% SVM-lin, 74\% SVM-rbf, 83\% NN, and 85\% CNN. Based on sensitivity (69–100\%) and specificity (90–99\%), CCN and NN are most suited to EOC classification. Conclusion and clinical relevance The pilot study demonstrates the potential of MALDI-Imaging derived proteomic classifiers in combination with machine learning algorithms to discriminate EOC histotypes. Applications may support the development of new prognostic parameters in the assessment of EOC.},
year = {2019}
}
Alessa Hering, Sven Kuckertz, Stefan Heldmann, and Mattias P Heinrich,
Memory-efficient 2.5 D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans, International journal of computer assisted radiology and surgery , vol. 14, no. 11, pp. 1901--1912, 2019. Springer.
File: s11548-019-02068-z
Bibtex: BibTeX
@article{hering2019memory,
  title={Memory-efficient 2.5 D convolutional transformer networks for multi-modal deformable registration with weak label supervision applied to whole-heart CT and MRI scans},
  author={Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P},
  journal={International journal of computer assisted radiology and surgery},
  volume={14},
  number={11},
  pages={1901--1912},
  year={2019},
  publisher={Springer}
}
Alessa Hering, Sven Kuckertz, Stefan Heldmann, and Mattias P Heinrich,
Enhancing label-driven deep deformable image registration with local distance metrics for state-of-the-art cardiac motion tracking, in Bildverarbeitung für die Medizin 2019 , Springer, 2019, pp. 309--314.
File: 10.1007%2F978-3-658-25326-4_69
Bibtex: BibTeX
@incollection{hering2019BVM,
  title={Enhancing label-driven deep deformable image registration with local distance metrics for state-of-the-art cardiac motion tracking},
  author={Hering, Alessa and Kuckertz, Sven and Heldmann, Stefan and Heinrich, Mattias P},
  booktitle={Bildverarbeitung f{\"u}r die Medizin 2019},
  pages={309--314},
  year={2019},
  publisher={Springer},
  url={http://dx.doi.org/10.1007%2F978-3-658-25326-4_69},
}
Alessa Hering, and Stefan Heldmann,
Unsupervised learning for large motion thoracic CT follow-up registration, in Medical Imaging 2019: Image Processing , SPIE, 2019. pp. 1-7.
DOI:10.1117/12.2506962
File: 12.2506962
Bibtex: BibTeX
@inproceedings{hering2019SPIE,
author = {Hering, Alessa and Heldmann, Stefan},
title = {{Unsupervised learning for large motion thoracic CT follow-up registration}},
volume = {10949},
booktitle = {Medical Imaging 2019: Image Processing},
organization = {International Society for Optics and Photonics},
publisher = {SPIE},
pages = {1-7},
year = {2019},
doi = {10.1117/12.2506962},
URL = {https://doi.org/10.1117/12.2506962}
}
Hans Meine, and Alessa Hering,
Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor, in Proceedings of Medical Imaging with Deep Learning (MIDL 2019) , 2019. pp. 1-4.
Bibtex: BibTeX
@inproceedings{hering2019MIDL,
author = {Meine, Hans and Hering, Alessa},
title = {{Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor}},
volume = {102},
booktitle = {Proceedings of Medical Imaging with Deep Learning (MIDL 2019)},
pages = {1-4},
year = {2019},
}
Alessa Hering, Bram Ginneken, and Stefan Heldmann,
mlVIRNET: Multilevel Variational Image Registration Network, in Proceeding of Medical Image Computing and Computer Assisted Intervention (MICCAI 2019) , Springer, 2019. pp. 257-265.
DOI:10.1007/978-3-030-32226-7_29
File: 978-3-030-32226-7_29
Bibtex: BibTeX
@inproceedings{hering2019MICCAI,
author = {Hering, Alessa and van Ginneken, Bram and Heldmann, Stefan},
title = {{mlVIRNET: Multilevel Variational Image Registration Network}},
volume = {11769},
booktitle = {Proceeding of Medical Image Computing and Computer Assisted Intervention (MICCAI 2019)},
publisher = {Springer},
pages = {257-265},
year = {2019},
doi = {10.1007/978-3-030-32226-7_29},
URL = {https://doi.org/10.1007/978-3-030-32226-7_29}
}
Wouter Bulten, Péter Bándi, Jeffrey Hoven, Rob Loo, Johannes Lotz, Nick Weiss, Jeroen Laak, Bram Ginneken, Christina Kaa, and Geert Litjens,
Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard, Scientific Reports , vol. 9, 2019.
File: s41598-018-37257-4
Bibtex: BibTeX
@article{Lotz2019,
  author={Bulten, Wouter and Bándi, Péter and Hoven, Jeffrey and van de Loo, Rob and Lotz, Johannes and Weiss, Nick and van der Laak, Jeroen and van Ginneken, Bram and Hulsbergen-van de Kaa, Christina and Litjens, Geert },
  title={Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard},
  journal={Scientific Reports},
  year={2019},
  volume={9},
  article={864},
  url={https://doi.org/10.1038/s41598-018-37257-4},
}
Jan Lellmann, Sebastian Neumayer, Max Nimmer, and Gabriele Steidl,
Methods for finding the offset in robust subspace fitting, PAMM , vol. 19, no. 1, pp. e201900323, 2019. Wiley Online Library.
DOI:10.1002/pamm.201900323
Bibtex: BibTeX
@article{lellmann2019methods,
  title={Methods for finding the offset in robust subspace fitting},
  author={Lellmann, Jan and Neumayer, Sebastian and Nimmer, Max and Steidl, Gabriele},
  journal={PAMM},
  volume={19},
  number={1},
  pages={e201900323},
  year={2019},
  publisher={Wiley Online Library}
}
Oliver Klein, Frederic Kanter, Hagen Kulbe, Paul Jank, Carsten Denkert, Grit Nebrich, Wolfgang D Schmitt, Zhiyang Wu, Catarina A Kunze, Jalid Sehouli, and others,
Front Cover: MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods, PROTEOMICS—Clinical Applications , vol. 13, no. 1, pp. 1970011, 2019. Wiley Online Library.
DOI:10.1002/prca.201970011
Bibtex: BibTeX
@article{klein2019front,
  title={Front Cover: MALDI-Imaging for Classification of Epithelial Ovarian Cancer Histotypes from a Tissue Microarray Using Machine Learning Methods},
  author={Klein, Oliver and Kanter, Frederic and Kulbe, Hagen and Jank, Paul and Denkert, Carsten and Nebrich, Grit and Schmitt, Wolfgang D and Wu, Zhiyang and Kunze, Catarina A and Sehouli, Jalid and others},
  journal={PROTEOMICS--Clinical Applications},
  volume={13},
  number={1},
  pages={1970011},
  year={2019},
  publisher={Wiley Online Library}
}
Hans Meine, and Alessa Hering,
Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor, arXiv preprint arXiv:1909.08898 , 2019.
Bibtex: BibTeX
@article{meine2019efficient,
  title={Efficient Prealignment of CT Scans for Registration through a Bodypart Regressor},
  author={Meine, Hans and Hering, Alessa},
  journal={arXiv preprint arXiv:1909.08898},
  year={2019}
}
Ke Chen, Lok Ming Lui, and Jan Modersitzki,
Chapter 15 - Image and surface registration, in Processing, Analyzing and Learning of Images, Shapes, and Forms: Part 2 , Ron Kimmel and Xue-Cheng Tai, Eds. Elsevier, 2019, pp. 579-611.
DOI:https://doi.org/10.1016/bs.hna.2019.07.001
File: S1570865919300146
Bibtex: BibTeX
@incollection{CHEN2019579,
title = {Chapter 15 - Image and surface registration},
editor = {Ron Kimmel and Xue-Cheng Tai},
series = {Handbook of Numerical Analysis},
publisher = {Elsevier},
volume = {20},
pages = {579-611},
year = {2019},
booktitle = {Processing, Analyzing and Learning of Images, Shapes, and Forms: Part 2},
issn = {1570-8659},
doi = {https://doi.org/10.1016/bs.hna.2019.07.001},
url = {https://www.sciencedirect.com/science/article/pii/S1570865919300146},
author = {Ke Chen and Lok Ming Lui and Jan Modersitzki},
keywords = {Image registration, Surface registration, Variational models, 35A15, 37E30, 49J40, 49Q05, 62H35, 62M40, 65D18, 80M30}
Dagmar Grob, Luuk Oostveen, Jan Rühaak, Stefan Heldmann, Brian Mohr, Koen Michielsen, Sabrina Dorn, Mathias Prokop, Marc Kachelrieß, Monique Brink, and Tanja Loßau,
Accuracy of registration algorithms in subtraction CT of the lungs: A digital phantom study, Medical physics , vol. 46, no. 5, pp. 2264—2274, 2019. Wiley Online Library.
Bibtex: BibTeX
@article{grob2019accuracy,
  title={Accuracy of registration algorithms in subtraction CT of the lungs: A digital phantom study},
  author={Grob, Dagmar and Oostveen, Luuk and R{\"u}haak, Jan and Heldmann, Stefan and Mohr, Brian and Michielsen, Koen and Dorn, Sabrina and Prokop, Mathias and Kachelrie$\beta$, Marc and Brink, Monique and others},
  journal={Medical physics},
  volume={46},
  number={5},
  pages={2264--2274},
  year={2019},
  publisher={Wiley Online Library}
}
Stephanie Häger,
Maschinelles Lernen für Momentum-basierte Bildgebung, 2019.
Bibtex: BibTeX
@article{hager2019maschinelles,
  title={Maschinelles Lernen f{\"u}r Momentum-basierte Bildgebung},
  author={H{\"a}ger, Stephanie},
  year={2019}
}
Johannes Lotz, Nick Weiss, and Stefan Heldmann,
Robust, fast and accurate: a 3-step method for automatic histological image registration, arXiv preprint arXiv:1903.12063 , 2019.
Bibtex: BibTeX
@article{lotz2019robust,
  title={Robust, fast and accurate: a 3-step method for automatic histological image registration},
  author={Lotz, Johannes and Weiss, Nick and Heldmann, Stefan},
  journal={arXiv preprint arXiv:1903.12063},
  year={2019}
}

2018

Kai Brehmer, Benjamin Wacker, and Jan Modersitzki,
A Novel Similarity Measure for Image Sequences, in International Workshop on Biomedical Image Registration , 2018. pp. 47--56.
DOI:10.1007/978-3-319-92258-4_5
File: 1907.09741}}
Bibtex: BibTeX
@inproceedings{brehmer2018novel,
  title={A Novel Similarity Measure for Image Sequences},
  author={Brehmer, Kai and Wacker, Benjamin and Modersitzki, Jan},
  booktitle={International Workshop on Biomedical Image Registration},
  pages={47--56},
  year={2018},
  organization={Springer},
  url={{{https://arxiv.org/abs/1907.09741}}},
  doi={{{10.1007/978-3-319-92258-4_5}}}
}
Lars König,
Matrix-free approaches for deformable image registration with large-scale and real-time applications in medical imaging, Institute of Mathematics and Image Computing, University of Lübeck, 2018.
File: lkoenig-dissertation_compressed.pdf
Bibtex: BibTeX
@phdthesis{2018-PhD-Konig,
  Author = {Lars König},
  Title = {Matrix-free approaches for deformable image registration with large-scale and real-time applications in medical imaging},
  School = {Institute of Mathematics and Image Computing, University of L\"ubeck},
  Year = {2018},
}
Veronica García-Vazquez, Felix Haxthausen, Sonja Jäckle, Christian Schumann, Ivo Kuhlemann, Juljan Bouchagiar, Anna-Catharina Höfer, Florian Matysiak, Gereon Hüttmann, Jan Peter Goltz, and Tanja Loßau,
Navigation and visualisation with HoloLens in endovascular aortic repair, Innovative Surgical Sciences , vol. 3, no. 3, pp. 167--177, 2018. De Gruyter.
File: iss-2018-2001.pdf
Bibtex: BibTeX
@article{garcia2018navigation,
  title={Navigation and visualisation with HoloLens in endovascular aortic repair},
  author={Garc{\'i}a-V{\'a}zquez, Ver{\'o}nica and von Haxthausen, Felix and J{\"a}ckle, Sonja and Schumann, Christian and Kuhlemann, Ivo and Bouchagiar, Juljan and H{\"o}fer, Anna-Catharina and Matysiak, Florian and H{\"u}ttmann, Gereon and Goltz, Jan Peter and others},
  journal={Innovative Surgical Sciences},
  volume={3},
  number={3},
  pages={167--177},
  year={2018},
  publisher={De Gruyter},
  keywords={NavEVAR},
  url={https://degruyter.com/downloadpdf/j/iss.2018.3.issue-3/iss-2018-2001/iss-2018-2001.pdf}
}
Sonja Jäckle, and Stefan Heldmann,
Rigid Lens - Locally Rigid Approximations of Deformable Registration for Change Assessment in Thorax-Abdomen CT Follow-Up Scans, in Image Analysis for Moving Organ, Breast, and Thoracic Images , Springer, 2018, pp. 272--283.
File: 978-3-030-00946-5_27
Bibtex: BibTeX
@incollection{jaeckle2018rigid,
  title={Rigid Lens--Locally Rigid Approximations of Deformable Registration for Change Assessment in Thorax-Abdomen CT Follow-Up Scans},
  author={J{\"a}ckle, Sonja and Heldmann, Stefan},
  booktitle={Image Analysis for Moving Organ, Breast, and Thoracic Images},
  pages={272--283},
  year={2018},
  publisher={Springer},
  url={https://link.springer.com/chapter/10.1007/978-3-030-00946-5_27},
}